Analysis of interatomic Contacts of Structural Units in PDB entry:
5GJX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GJX entry

There are 3 chains in PDB entry 5GJX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4TRP 273
B
 MET 1PHE 104
C
 ARG 1ILE 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5GJX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 55Right-handed alpha
Helix 2
AA2
A
58 87Right-handed alpha
Helix 3
AA3
A
136 150Right-handed alpha
Helix 4
AA4
A
151 162Right-handed alpha
Helix 5
AA5
A
162 175Right-handed alpha
Helix 6
AA6
A
175 180Right-handed alpha
Helix 7
AA7
A
224 227Right-handed 310
Helix 8
AA8
A
252 254Right-handed 310
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There are 7 sheets in PDB entry 5GJX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
34 40anti-parallel
Strand 3
A
25 31anti-parallel
Strand 4
A
6 15anti-parallel
Strand 5
A
95 105anti-parallel
Strand 6
A
108 117anti-parallel
Strand 7
A
120 126anti-parallel
Strand 8
A
131 134anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 192first strand
Strand 2
A
199 207anti-parallel
Strand 3
A
240 247anti-parallel
Strand 4
A
228 229anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 192first strand
Strand 2
A
199 207anti-parallel
Strand 3
A
240 247anti-parallel
Strand 4
A
233 234anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
213 218anti-parallel
Strand 3
A
256 261anti-parallel
Strand 4
A
269 271anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 16first strand
Strand 2
B
26 35anti-parallel
Strand 3
B
67 75anti-parallel
Strand 4
B
55 56anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 16first strand
Strand 2
B
26 35anti-parallel
Strand 3
B
67 75anti-parallel
Strand 4
B
60 61anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
41 46anti-parallel
Strand 3
B
83 88anti-parallel
Strand 4
B
96 99anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il