Analysis of interatomic Contacts of Structural Units in PDB entry:
5GK0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GK0 entry

There are 8 chains in PDB entry 5GK0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	ALA 125
A	ALA 127	VAL 382
B	ASN 4	ALA 125
B	ALA 127	VAL 382
C	ASN 4	ALA 125
C	ALA 127	VAL 382
D	ASN 3	ALA 125
D	ALA 127	VAL 382

There are 86 helices in PDB entry 5GK0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	29	Right-handed alpha
Helix 2	AA2	A	38	47	Right-handed alpha
Helix 3	AA3	A	65	76	Right-handed alpha
Helix 4	AA4	A	83	87	Right-handed 310
Helix 5	AA5	A	103	113	Right-handed alpha
Helix 6	AA6	A	127	142	Right-handed alpha
Helix 7	AA7	A	156	161	Right-handed alpha
Helix 8	AA8	A	162	164	Right-handed 310
Helix 9	AA9	A	165	175	Right-handed alpha
Helix 10	AB1	A	183	188	Right-handed alpha
Helix 11	AB2	A	189	192	Right-handed 310
Helix 12	AB3	A	247	249	Right-handed 310
Helix 13	AB4	A	250	257	Right-handed alpha
Helix 14	AB5	A	265	278	Right-handed alpha
Helix 15	AB6	A	278	290	Right-handed alpha
Helix 16	AB7	A	292	296	Right-handed 310
Helix 17	AB8	A	305	319	Right-handed alpha
Helix 18	AB9	A	324	328	Right-handed 310
Helix 19	AC1	A	331	336	Right-handed alpha
Helix 20	AC2	A	338	340	Right-handed 310
Helix 21	AC3	A	341	353	Right-handed alpha
Helix 22	AC4	B	21	29	Right-handed alpha
Helix 23	AC5	B	38	47	Right-handed alpha
Helix 24	AC6	B	65	76	Right-handed alpha
Helix 25	AC7	B	83	87	Right-handed 310
Helix 26	AC8	B	103	113	Right-handed alpha
Helix 27	AC9	B	127	142	Right-handed alpha
Helix 28	AD1	B	156	161	Right-handed alpha
Helix 29	AD2	B	162	164	Right-handed 310
Helix 30	AD3	B	165	170	Right-handed alpha
Helix 31	AD4	B	183	188	Right-handed alpha
Helix 32	AD5	B	189	192	Right-handed 310
Helix 33	AD6	B	247	249	Right-handed 310
Helix 34	AD7	B	250	257	Right-handed alpha
Helix 35	AD8	B	265	278	Right-handed alpha
Helix 36	AD9	B	278	289	Right-handed alpha
Helix 37	AE1	B	292	296	Right-handed 310
Helix 38	AE2	B	305	307	Right-handed 310
Helix 39	AE3	B	308	319	Right-handed alpha
Helix 40	AE4	B	324	328	Right-handed 310
Helix 41	AE5	B	331	336	Right-handed alpha
Helix 42	AE6	B	338	340	Right-handed 310
Helix 43	AE7	B	341	353	Right-handed alpha
Helix 44	AE8	C	23	29	Right-handed alpha
Helix 45	AE9	C	38	47	Right-handed alpha
Helix 46	AF1	C	65	76	Right-handed alpha
Helix 47	AF2	C	83	87	Right-handed 310
Helix 48	AF3	C	103	113	Right-handed alpha
Helix 49	AF4	C	127	142	Right-handed alpha
Helix 50	AF5	C	156	161	Right-handed alpha
Helix 51	AF6	C	162	165	Right-handed 310
Helix 52	AF7	C	167	177	Right-handed alpha
Helix 53	AF8	C	183	191	Right-handed alpha
Helix 54	AF9	C	247	249	Right-handed 310
Helix 55	AG1	C	252	257	Right-handed alpha
Helix 56	AG2	C	265	278	Right-handed alpha
Helix 57	AG3	C	278	289	Right-handed alpha
Helix 58	AG4	C	292	294	Right-handed 310
Helix 59	AG5	C	305	319	Right-handed alpha
Helix 60	AG6	C	324	328	Right-handed 310
Helix 61	AG7	C	331	336	Right-handed alpha
Helix 62	AG8	C	338	340	Right-handed 310
Helix 63	AG9	C	341	352	Right-handed alpha
Helix 64	AH1	D	23	29	Right-handed alpha
Helix 65	AH2	D	30	34	Right-handed 310
Helix 66	AH3	D	38	47	Right-handed alpha
Helix 67	AH4	D	65	76	Right-handed alpha
Helix 68	AH5	D	83	87	Right-handed 310
Helix 69	AH6	D	103	113	Right-handed alpha
Helix 70	AH7	D	127	142	Right-handed alpha
Helix 71	AH8	D	156	161	Right-handed alpha
Helix 72	AH9	D	162	164	Right-handed 310
Helix 73	AI1	D	165	175	Right-handed alpha
Helix 74	AI2	D	183	188	Right-handed alpha
Helix 75	AI3	D	189	192	Right-handed 310
Helix 76	AI4	D	247	249	Right-handed 310
Helix 77	AI5	D	250	258	Right-handed alpha
Helix 78	AI6	D	265	278	Right-handed alpha
Helix 79	AI7	D	278	290	Right-handed alpha
Helix 80	AI8	D	292	296	Right-handed 310
Helix 81	AI9	D	305	307	Right-handed 310
Helix 82	AJ1	D	308	319	Right-handed alpha
Helix 83	AJ2	D	324	328	Right-handed 310
Helix 84	AJ3	D	331	336	Right-handed alpha
Helix 85	AJ4	D	338	340	Right-handed 310
Helix 86	AJ5	D	341	354	Right-handed alpha

There are 16 sheets in PDB entry 5GK0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	122	first strand
Strand 2	A	89	93	parallel
Strand 3	A	147	154	parallel
Strand 4	A	196	203	anti-parallel
Strand 5	A	6	13	anti-parallel
Strand 6	A	212	222	anti-parallel
Strand 7	A	373	382	anti-parallel
Strand 8	A	361	368	anti-parallel
Strand 9	A	298	301	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	20	first strand
Strand 2	A	50	51	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	232	first strand
Strand 2	A	263	264	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	243	245	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	122	first strand
Strand 2	B	89	93	parallel
Strand 3	B	147	154	parallel
Strand 4	B	196	203	anti-parallel
Strand 5	B	6	13	anti-parallel
Strand 6	B	212	222	anti-parallel
Strand 7	B	373	382	anti-parallel
Strand 8	B	361	368	anti-parallel
Strand 9	B	298	301	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	20	first strand
Strand 2	B	50	51	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	232	first strand
Strand 2	B	263	264	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	237	first strand
Strand 2	B	243	245	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	89	93	parallel
Strand 3	C	147	154	parallel
Strand 4	C	196	203	anti-parallel
Strand 5	C	6	13	anti-parallel
Strand 6	C	212	222	anti-parallel
Strand 7	C	373	382	anti-parallel
Strand 8	C	361	368	anti-parallel
Strand 9	C	296	301	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	20	first strand
Strand 2	C	50	51	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	233	first strand
Strand 2	C	262	264	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	237	first strand
Strand 2	C	243	245	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	122	first strand
Strand 2	D	89	93	parallel
Strand 3	D	147	154	parallel
Strand 4	D	196	203	anti-parallel
Strand 5	D	6	13	anti-parallel
Strand 6	D	212	222	anti-parallel
Strand 7	D	373	382	anti-parallel
Strand 8	D	361	368	anti-parallel
Strand 9	D	298	301	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	20	first strand
Strand 2	D	50	51	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	232	first strand
Strand 2	D	263	264	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	237	first strand
Strand 2	D	243	245	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GK0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GK0