Analysis of interatomic Contacts of Structural Units in PDB entry:
5GK5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GK5 entry

There are 8 chains in PDB entry 5GK5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	LEU 358
B	SER 1	LEU 358
C	SER 1	LEU 358
D	SER 1	LEU 358
E	SER 1	LEU 358
F	SER 1	LEU 358
G	SER 1	LEU 358
H	SER 1	LEU 358

There are128 helices in PDB entry 5GK5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	6	Right-handed 310
Helix 2	AA2	A	14	27	Right-handed alpha
Helix 3	AA3	A	38	53	Right-handed alpha
Helix 4	AA4	A	61	70	Right-handed alpha
Helix 5	AA5	A	79	97	Right-handed alpha
Helix 6	AA6	A	98	101	Right-handed 310
Helix 7	AA7	A	112	114	Right-handed 310
Helix 8	AA8	A	115	134	Right-handed alpha
Helix 9	AA9	A	149	166	Right-handed alpha
Helix 10	AB1	A	198	211	Right-handed alpha
Helix 11	AB2	A	238	253	Right-handed alpha
Helix 12	AB3	A	270	280	Right-handed alpha
Helix 13	AB4	A	288	306	Right-handed alpha
Helix 14	AB5	A	307	310	Right-handed 310
Helix 15	AB6	A	324	329	Right-handed alpha
Helix 16	AB7	A	329	352	Right-handed alpha
Helix 17	AB8	B	2	6	Right-handed 310
Helix 18	AB9	B	14	27	Right-handed alpha
Helix 19	AC1	B	38	53	Right-handed alpha
Helix 20	AC2	B	61	70	Right-handed alpha
Helix 21	AC3	B	79	97	Right-handed alpha
Helix 22	AC4	B	98	101	Right-handed 310
Helix 23	AC5	B	112	115	Right-handed 310
Helix 24	AC6	B	116	134	Right-handed alpha
Helix 25	AC7	B	149	166	Right-handed alpha
Helix 26	AC8	B	198	211	Right-handed alpha
Helix 27	AC9	B	238	253	Right-handed alpha
Helix 28	AD1	B	270	280	Right-handed alpha
Helix 29	AD2	B	288	306	Right-handed alpha
Helix 30	AD3	B	307	310	Right-handed 310
Helix 31	AD4	B	324	329	Right-handed alpha
Helix 32	AD5	B	329	352	Right-handed alpha
Helix 33	AD6	C	2	6	Right-handed 310
Helix 34	AD7	C	14	27	Right-handed alpha
Helix 35	AD8	C	38	53	Right-handed alpha
Helix 36	AD9	C	61	70	Right-handed alpha
Helix 37	AE1	C	79	97	Right-handed alpha
Helix 38	AE2	C	98	101	Right-handed 310
Helix 39	AE3	C	112	114	Right-handed 310
Helix 40	AE4	C	115	134	Right-handed alpha
Helix 41	AE5	C	149	166	Right-handed alpha
Helix 42	AE6	C	198	211	Right-handed alpha
Helix 43	AE7	C	238	253	Right-handed alpha
Helix 44	AE8	C	270	280	Right-handed alpha
Helix 45	AE9	C	288	306	Right-handed alpha
Helix 46	AF1	C	307	310	Right-handed 310
Helix 47	AF2	C	324	329	Right-handed alpha
Helix 48	AF3	C	329	352	Right-handed alpha
Helix 49	AF4	D	2	6	Right-handed 310
Helix 50	AF5	D	14	27	Right-handed alpha
Helix 51	AF6	D	38	53	Right-handed alpha
Helix 52	AF7	D	61	70	Right-handed alpha
Helix 53	AF8	D	79	97	Right-handed alpha
Helix 54	AF9	D	98	101	Right-handed 310
Helix 55	AG1	D	112	115	Right-handed 310
Helix 56	AG2	D	116	134	Right-handed alpha
Helix 57	AG3	D	149	166	Right-handed alpha
Helix 58	AG4	D	198	211	Right-handed alpha
Helix 59	AG5	D	238	253	Right-handed alpha
Helix 60	AG6	D	270	280	Right-handed alpha
Helix 61	AG7	D	288	306	Right-handed alpha
Helix 62	AG8	D	307	310	Right-handed 310
Helix 63	AG9	D	324	329	Right-handed alpha
Helix 64	AH1	D	329	352	Right-handed alpha
Helix 65	AH2	E	2	6	Right-handed 310
Helix 66	AH3	E	14	27	Right-handed alpha
Helix 67	AH4	E	38	53	Right-handed alpha
Helix 68	AH5	E	61	70	Right-handed alpha
Helix 69	AH6	E	79	97	Right-handed alpha
Helix 70	AH7	E	98	101	Right-handed 310
Helix 71	AH8	E	112	114	Right-handed 310
Helix 72	AH9	E	115	134	Right-handed alpha
Helix 73	AI1	E	149	166	Right-handed alpha
Helix 74	AI2	E	198	211	Right-handed alpha
Helix 75	AI3	E	238	253	Right-handed alpha
Helix 76	AI4	E	270	280	Right-handed alpha
Helix 77	AI5	E	288	306	Right-handed alpha
Helix 78	AI6	E	307	310	Right-handed 310
Helix 79	AI7	E	324	329	Right-handed alpha
Helix 80	AI8	E	329	352	Right-handed alpha
Helix 81	AI9	F	2	6	Right-handed 310
Helix 82	AJ1	F	14	28	Right-handed alpha
Helix 83	AJ2	F	38	53	Right-handed alpha
Helix 84	AJ3	F	61	70	Right-handed alpha
Helix 85	AJ4	F	79	97	Right-handed alpha
Helix 86	AJ5	F	98	101	Right-handed 310
Helix 87	AJ6	F	112	115	Right-handed 310
Helix 88	AJ7	F	116	134	Right-handed alpha
Helix 89	AJ8	F	149	166	Right-handed alpha
Helix 90	AJ9	F	198	211	Right-handed alpha
Helix 91	AK1	F	238	253	Right-handed alpha
Helix 92	AK2	F	270	280	Right-handed alpha
Helix 93	AK3	F	288	306	Right-handed alpha
Helix 94	AK4	F	307	310	Right-handed 310
Helix 95	AK5	F	324	329	Right-handed alpha
Helix 96	AK6	F	329	352	Right-handed alpha
Helix 97	AK7	G	2	6	Right-handed 310
Helix 98	AK8	G	14	27	Right-handed alpha
Helix 99	AK9	G	38	53	Right-handed alpha
Helix 100	AL1	G	61	70	Right-handed alpha
Helix 101	AL2	G	79	97	Right-handed alpha
Helix 102	AL3	G	98	101	Right-handed 310
Helix 103	AL4	G	112	114	Right-handed 310
Helix 104	AL5	G	115	134	Right-handed alpha
Helix 105	AL6	G	149	166	Right-handed alpha
Helix 106	AL7	G	198	211	Right-handed alpha
Helix 107	AL8	G	238	253	Right-handed alpha
Helix 108	AL9	G	270	280	Right-handed alpha
Helix 109	AM1	G	288	306	Right-handed alpha
Helix 110	AM2	G	307	310	Right-handed 310
Helix 111	AM3	G	324	329	Right-handed alpha
Helix 112	AM4	G	329	352	Right-handed alpha
Helix 113	AM5	H	2	6	Right-handed 310
Helix 114	AM6	H	14	27	Right-handed alpha
Helix 115	AM7	H	38	53	Right-handed alpha
Helix 116	AM8	H	61	70	Right-handed alpha
Helix 117	AM9	H	79	97	Right-handed alpha
Helix 118	AN1	H	98	101	Right-handed 310
Helix 119	AN2	H	112	114	Right-handed 310
Helix 120	AN3	H	115	134	Right-handed alpha
Helix 121	AN4	H	149	166	Right-handed alpha
Helix 122	AN5	H	198	211	Right-handed alpha
Helix 123	AN6	H	238	253	Right-handed alpha
Helix 124	AN7	H	270	280	Right-handed alpha
Helix 125	AN8	H	288	306	Right-handed alpha
Helix 126	AN9	H	307	310	Right-handed 310
Helix 127	AO1	H	324	329	Right-handed alpha
Helix 128	AO2	H	329	352	Right-handed alpha

There are 16 sheets in PDB entry 5GK5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	11	first strand
Strand 2	A	103	108	parallel
Strand 3	A	140	143	parallel
Strand 4	A	170	174	parallel
Strand 5	A	216	219	parallel
Strand 6	A	261	263	parallel
Strand 7	A	282	287	parallel
Strand 8	A	31	35	parallel
Strand 9	A	56	60	parallel
Strand 10	A	103	108	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	316	first strand
Strand 2	A	319	323	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	11	first strand
Strand 2	B	103	108	parallel
Strand 3	B	140	143	parallel
Strand 4	B	170	175	parallel
Strand 5	B	216	220	parallel
Strand 6	B	261	263	parallel
Strand 7	B	282	287	parallel
Strand 8	B	31	35	parallel
Strand 9	B	56	60	parallel
Strand 10	B	103	108	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	316	first strand
Strand 2	B	319	323	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	103	108	parallel
Strand 3	C	140	143	parallel
Strand 4	C	170	174	parallel
Strand 5	C	216	219	parallel
Strand 6	C	261	263	parallel
Strand 7	C	282	287	parallel
Strand 8	C	31	35	parallel
Strand 9	C	56	60	parallel
Strand 10	C	103	108	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	316	first strand
Strand 2	C	319	323	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	103	108	parallel
Strand 3	D	140	143	parallel
Strand 4	D	170	174	parallel
Strand 5	D	216	219	parallel
Strand 6	D	261	263	parallel
Strand 7	D	282	287	parallel
Strand 8	D	31	35	parallel
Strand 9	D	56	60	parallel
Strand 10	D	103	108	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	314	316	first strand
Strand 2	D	319	323	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	11	first strand
Strand 2	E	103	108	parallel
Strand 3	E	140	143	parallel
Strand 4	E	170	174	parallel
Strand 5	E	216	219	parallel
Strand 6	E	261	263	parallel
Strand 7	E	282	287	parallel
Strand 8	E	31	35	parallel
Strand 9	E	56	60	parallel
Strand 10	E	103	108	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	314	316	first strand
Strand 2	E	319	323	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	103	108	parallel
Strand 3	F	140	143	parallel
Strand 4	F	170	175	parallel
Strand 5	F	216	220	parallel
Strand 6	F	261	263	parallel
Strand 7	F	282	287	parallel
Strand 8	F	31	35	parallel
Strand 9	F	56	60	parallel
Strand 10	F	103	108	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	314	316	first strand
Strand 2	F	319	323	anti-parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	11	first strand
Strand 2	G	103	108	parallel
Strand 3	G	140	143	parallel
Strand 4	G	170	174	parallel
Strand 5	G	216	219	parallel
Strand 6	G	261	263	parallel
Strand 7	G	282	287	parallel
Strand 8	G	31	35	parallel
Strand 9	G	56	60	parallel
Strand 10	G	103	108	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	314	316	first strand
Strand 2	G	319	323	anti-parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	103	108	parallel
Strand 3	H	140	143	parallel
Strand 4	H	170	175	parallel
Strand 5	H	216	220	parallel
Strand 6	H	261	263	parallel
Strand 7	H	282	287	parallel
Strand 8	H	31	35	parallel
Strand 9	H	56	60	parallel
Strand 10	H	103	108	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	314	316	first strand
Strand 2	H	319	323	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GK5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GK5