Analysis of interatomic Contacts of Structural Units in PDB entry:
5GKA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GKA entry

There are 3 chains in PDB entry 5GKA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1GLN 253
B
 THR 5GLN 371
C
 HIS 2SER 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5GKA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 47Right-handed alpha
Helix 2
AA2
A
76 82Right-handed alpha
Helix 3
AA3
A
88 93Right-handed alpha
Helix 4
AA4
A
94 96Right-handed 310
Helix 5
AA5
A
135 141Right-handed alpha
Helix 6
AA6
B
201 205Right-handed 310
Helix 7
AA7
B
228 234Right-handed alpha
Helix 8
AA8
B
239 244Right-handed alpha
Helix 9
AA9
B
280 285Right-handed alpha
Helix 10
AB1
B
291 295Right-handed 310
Helix 11
AB2
C
45 50Right-handed alpha
Helix 12
AB3
C
76 82Right-handed alpha
Helix 13
AB4
C
87 93Right-handed alpha
Helix 14
AB5
C
131 136Right-handed alpha
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There are 12 sheets in PDB entry 5GKA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
211 219anti-parallel
Strand 3
A
63 66anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
211 219anti-parallel
Strand 3
A
104 110anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
98 100anti-parallel
Strand 3
A
224 225anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 201first strand
Strand 2
A
117 123anti-parallel
Strand 3
A
145 149anti-parallel
Strand 4
C
14 15anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 132first strand
Strand 2
B
139 141anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 177first strand
Strand 2
B
352 362anti-parallel
Strand 3
B
251 260anti-parallel
Strand 4
B
307 312anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 183first strand
Strand 2
B
349 350anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 227first strand
Strand 2
B
329 331anti-parallel
Strand 3
B
276 277anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 273first strand
Strand 2
B
333 334anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 61first strand
Strand 2
C
198 207anti-parallel
Strand 3
C
101 106anti-parallel
Strand 4
C
150 152anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 71first strand
Strand 2
C
180 190anti-parallel
Strand 3
C
114 122anti-parallel
Strand 4
C
140 144anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
164 165first strand
Strand 2
C
94 98anti-parallel
Strand 3
C
212 216anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il