Analysis of interatomic Contacts of Structural Units in PDB entry:
5GKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GKJ entry

There are 2 chains in PDB entry 5GKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5PRO 237
B
 ASP 4LYS 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5GKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 28Right-handed alpha
Helix 2
AA2
A
135 142Right-handed alpha
Helix 3
AA3
A
143 146Right-handed 310
Helix 4
AA4
A
188 204Right-handed alpha
Helix 5
AA5
A
218 228Right-handed alpha
Helix 6
AA6
B
13 28Right-handed alpha
Helix 7
AA7
B
132 142Right-handed alpha
Helix 8
AA8
B
143 146Right-handed 310
Helix 9
AA9
B
186 205Right-handed alpha
Helix 10
AB1
B
218 229Right-handed alpha
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There are 6 sheets in PDB entry 5GKJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
103 118anti-parallel
Strand 3
A
30 42anti-parallel
Strand 4
A
47 58anti-parallel
Strand 5
A
64 67anti-parallel
Strand 6
A
76 78anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
103 118anti-parallel
Strand 3
A
93 98anti-parallel
Strand 4
A
83 87anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 154first strand
Strand 2
A
166 170anti-parallel
Strand 3
A
174 180anti-parallel
Strand 4
A
209 214parallel
Strand 5
A
231 234parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 10first strand
Strand 2
B
103 118anti-parallel
Strand 3
B
30 42anti-parallel
Strand 4
B
47 58anti-parallel
Strand 5
B
64 67anti-parallel
Strand 6
B
76 78anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 10first strand
Strand 2
B
103 118anti-parallel
Strand 3
B
93 98anti-parallel
Strand 4
B
83 87anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 157first strand
Strand 2
B
164 169anti-parallel
Strand 3
B
175 180anti-parallel
Strand 4
B
209 214parallel
Strand 5
B
231 234parallel
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