Analysis of interatomic Contacts of Structural Units in PDB entry:
5GKM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GKM entry

There are 2 chains in PDB entry 5GKM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 75GLY 232
B
 VAL 79LYS 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5GKM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
84 101Right-handed alpha
Helix 2
AA2
A
107 119Right-handed alpha
Helix 3
AA3
A
124 128Right-handed 310
Helix 4
AA4
A
131 145Right-handed alpha
Helix 5
AA5
A
162 166Right-handed 310
Helix 6
AA6
A
169 186Right-handed alpha
Helix 7
AA7
A
192 204Right-handed alpha
Helix 8
AA8
A
206 216Right-handed alpha
Helix 9
AA9
A
218 232Right-handed alpha
Helix 10
AB1
B
79 83Right-handed 310
Helix 11
AB2
B
84 101Right-handed alpha
Helix 12
AB3
B
107 119Right-handed alpha
Helix 13
AB4
B
124 128Right-handed 310
Helix 14
AB5
B
131 145Right-handed alpha
Helix 15
AB6
B
162 166Right-handed 310
Helix 16
AB7
B
169 186Right-handed alpha
Helix 17
AB8
B
192 201Right-handed alpha
Helix 18
AB9
B
206 215Right-handed alpha
Helix 19
AC1
B
218 231Right-handed alpha
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There are no sheets in PDB entry 5GKM
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il