Analysis of interatomic Contacts of Structural Units in PDB entry:
5GKO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GKO entry

There are 2 chains in PDB entry 5GKO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLU 664
B
 LYS 3GLU 664
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 5GKO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 57Right-handed alpha
Helix 2
AA2
A
78 89Right-handed alpha
Helix 3
AA3
A
104 116Right-handed alpha
Helix 4
AA4
A
119 134Right-handed alpha
Helix 5
AA5
A
136 140Right-handed 310
Helix 6
AA6
A
143 147Right-handed 310
Helix 7
AA7
A
148 161Right-handed alpha
Helix 8
AA8
A
178 195Right-handed alpha
Helix 9
AA9
A
205 210Right-handed alpha
Helix 10
AB1
A
232 237Right-handed alpha
Helix 11
AB2
A
262 282Right-handed alpha
Helix 12
AB3
A
282 318Right-handed alpha
Helix 13
AB4
A
319 321Right-handed 310
Helix 14
AB5
A
340 344Right-handed 310
Helix 15
AB6
A
347 356Right-handed alpha
Helix 16
AB7
A
390 395Right-handed alpha
Helix 17
AB8
A
406 412Right-handed alpha
Helix 18
AB9
A
421 428Right-handed alpha
Helix 19
AC1
A
471 478Right-handed alpha
Helix 20
AC2
A
493 495Right-handed 310
Helix 21
AC3
A
496 512Right-handed alpha
Helix 22
AC4
A
522 549Right-handed alpha
Helix 23
AC5
A
550 552Right-handed 310
Helix 24
AC6
A
553 566Right-handed alpha
Helix 25
AC7
A
566 576Right-handed alpha
Helix 26
AC8
A
579 597Right-handed alpha
Helix 27
AC9
A
598 617Right-handed alpha
Helix 28
AD1
A
626 645Right-handed alpha
Helix 29
AD2
A
645 654Right-handed alpha
Helix 30
AD3
A
656 662Right-handed alpha
Helix 31
AD4
B
48 57Right-handed alpha
Helix 32
AD5
B
78 89Right-handed alpha
Helix 33
AD6
B
104 116Right-handed alpha
Helix 34
AD7
B
119 134Right-handed alpha
Helix 35
AD8
B
136 140Right-handed 310
Helix 36
AD9
B
143 147Right-handed 310
Helix 37
AE1
B
148 163Right-handed alpha
Helix 38
AE2
B
178 195Right-handed alpha
Helix 39
AE3
B
205 210Right-handed alpha
Helix 40
AE4
B
232 237Right-handed alpha
Helix 41
AE5
B
263 282Right-handed alpha
Helix 42
AE6
B
283 318Right-handed alpha
Helix 43
AE7
B
337 344Right-handed alpha
Helix 44
AE8
B
347 356Right-handed alpha
Helix 45
AE9
B
390 395Right-handed alpha
Helix 46
AF1
B
406 412Right-handed alpha
Helix 47
AF2
B
421 428Right-handed alpha
Helix 48
AF3
B
471 478Right-handed alpha
Helix 49
AF4
B
493 495Right-handed 310
Helix 50
AF5
B
496 512Right-handed alpha
Helix 51
AF6
B
522 550Right-handed alpha
Helix 52
AF7
B
553 576Right-handed alpha
Helix 53
AF8
B
579 614Right-handed alpha
Helix 54
AF9
B
626 645Right-handed alpha
Helix 55
AG1
B
646 654Right-handed alpha
Helix 56
AG2
B
656 662Right-handed alpha
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There are 8 sheets in PDB entry 5GKO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 33first strand
Strand 2
A
7 17anti-parallel
Strand 3
A
64 69anti-parallel
Strand 4
A
72 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
167 170parallel
Strand 3
A
198 203parallel
Strand 4
A
38 42parallel
Strand 5
A
214 219parallel
Strand 6
A
222 228anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 399first strand
Strand 2
A
444 453anti-parallel
Strand 3
A
416 420parallel
Strand 4
A
466 470anti-parallel
Strand 5
A
378 387parallel
Strand 6
A
360 375anti-parallel
Strand 7
A
486 491anti-parallel
Strand 8
A
325 329anti-parallel
Strand 9
A
518 521anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 399first strand
Strand 2
A
444 453anti-parallel
Strand 3
A
438 441anti-parallel
Strand 4
A
360 375anti-parallel
Strand 5
A
486 491anti-parallel
Strand 6
A
325 329anti-parallel
Strand 7
A
518 521anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 33first strand
Strand 2
B
7 17anti-parallel
Strand 3
B
64 69anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 93first strand
Strand 2
B
167 171parallel
Strand 3
B
198 203parallel
Strand 4
B
38 42parallel
Strand 5
B
214 219parallel
Strand 6
B
222 228anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
398 399first strand
Strand 2
B
444 453anti-parallel
Strand 3
B
416 420parallel
Strand 4
B
465 470anti-parallel
Strand 5
B
378 387parallel
Strand 6
B
360 375anti-parallel
Strand 7
B
486 491anti-parallel
Strand 8
B
325 330anti-parallel
Strand 9
B
517 521anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
398 399first strand
Strand 2
B
444 453anti-parallel
Strand 3
B
438 441anti-parallel
Strand 4
B
360 375anti-parallel
Strand 5
B
486 491anti-parallel
Strand 6
B
325 330anti-parallel
Strand 7
B
517 521anti-parallel
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