Analysis of interatomic Contacts of Structural Units in PDB entry:
5GKQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GKQ entry

There are 2 chains in PDB entry 5GKQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LEU 727
B
 ALA 2LEU 727
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5GKQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 19Right-handed alpha
Helix 2
AA2
A
284 288Right-handed 310
Helix 3
AA3
A
419 423Right-handed 310
Helix 4
AA4
A
450 459Right-handed alpha
Helix 5
AA5
B
8 19Right-handed alpha
Helix 6
AA6
B
157 161Right-handed 310
Helix 7
AA7
B
190 194Right-handed 310
Helix 8
AA8
B
284 288Right-handed 310
Helix 9
AA9
B
405 409Right-handed 310
Helix 10
AB1
B
419 423Right-handed 310
Helix 11
AB2
B
450 459Right-handed alpha
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There are 17 sheets in PDB entry 5GKQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
24 27parallel
Strand 3
A
49 53parallel
Strand 4
A
74 84parallel
Strand 5
A
106 113parallel
Strand 6
A
135 137parallel
Strand 7
A
166 168parallel
Strand 8
A
201 203parallel
Strand 9
A
225 227parallel
Strand 10
A
247 249parallel
Strand 11
A
272 274parallel
Strand 12
A
311 313parallel
Strand 13
A
340 343parallel
Strand 14
A
365 368parallel
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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
59 63parallel
Strand 3
A
74 84parallel
Strand 4
A
106 113parallel
Strand 5
A
140 142parallel
Strand 6
A
171 172parallel
Strand 7
A
206 208parallel
Strand 8
A
230 232parallel
Strand 9
A
252 254parallel
Strand 10
A
277 279parallel
Strand 11
A
316 318parallel
Strand 12
A
346 348parallel
Strand 13
A
370 373parallel
Strand 14
A
384 387parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 42first strand
Strand 2
A
66 72parallel
Strand 3
A
100 103parallel
Strand 4
A
95 97anti-parallel
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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 42first strand
Strand 2
A
66 72parallel
Strand 3
A
90 93parallel
Strand 4
A
125 129parallel
Strand 5
A
151 153parallel
Strand 6
A
186 189parallel
Strand 7
A
215 220parallel
Strand 8
A
237 242parallel
Strand 9
A
264 266parallel
Strand 10
A
290 293parallel
Strand 11
A
323 327parallel
Strand 12
A
356 358parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 393first strand
Strand 2
A
399 401anti-parallel
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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 445first strand
Strand 2
A
463 467parallel
Strand 3
A
483 488parallel
Strand 4
A
511 515parallel
Strand 5
A
544 549parallel
Strand 6
A
573 579parallel
Strand 7
A
607 611parallel
Strand 8
A
638 642parallel
Strand 9
A
668 672parallel
Strand 10
A
692 696parallel
Strand 11
A
718 722parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 474first strand
Strand 2
A
494 498parallel
Strand 3
A
518 520parallel
Strand 4
A
552 556parallel
Strand 5
A
582 586parallel
Strand 6
A
614 618parallel
Strand 7
A
645 649parallel
Strand 8
A
675 677parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 480first strand
Strand 2
A
502 506parallel
Strand 3
A
531 535parallel
Strand 4
A
563 566parallel
Strand 5
A
591 593parallel
Strand 6
A
623 626parallel
Strand 7
A
661 664parallel
Strand 8
A
682 686parallel
Strand 9
A
707 710parallel
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There are 14 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
24 27parallel
Strand 3
B
49 53parallel
Strand 4
B
74 84parallel
Strand 5
B
106 113parallel
Strand 6
B
135 137parallel
Strand 7
B
166 168parallel
Strand 8
B
201 203parallel
Strand 9
B
225 227parallel
Strand 10
B
247 249parallel
Strand 11
B
272 274parallel
Strand 12
B
311 313parallel
Strand 13
B
340 343parallel
Strand 14
B
365 368parallel
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There are 14 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 33first strand
Strand 2
B
59 63parallel
Strand 3
B
74 84parallel
Strand 4
B
106 113parallel
Strand 5
B
140 142parallel
Strand 6
B
171 172parallel
Strand 7
B
206 208parallel
Strand 8
B
230 232parallel
Strand 9
B
252 254parallel
Strand 10
B
277 279parallel
Strand 11
B
316 318parallel
Strand 12
B
346 348parallel
Strand 13
B
370 373parallel
Strand 14
B
384 387parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 42first strand
Strand 2
B
66 72parallel
Strand 3
B
102 103parallel
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There are 12 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 42first strand
Strand 2
B
66 72parallel
Strand 3
B
90 93parallel
Strand 4
B
125 129parallel
Strand 5
B
151 153parallel
Strand 6
B
186 188parallel
Strand 7
B
215 220parallel
Strand 8
B
237 242parallel
Strand 9
B
264 266parallel
Strand 10
B
290 293parallel
Strand 11
B
323 327parallel
Strand 12
B
356 358parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 393first strand
Strand 2
B
399 401anti-parallel
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There are 11 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
442 445first strand
Strand 2
B
463 467parallel
Strand 3
B
483 488parallel
Strand 4
B
511 515parallel
Strand 5
B
544 549parallel
Strand 6
B
573 579parallel
Strand 7
B
607 611parallel
Strand 8
B
638 642parallel
Strand 9
B
668 672parallel
Strand 10
B
692 696parallel
Strand 11
B
718 722parallel
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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
448 449first strand
Strand 2
B
470 474parallel
Strand 3
B
494 498parallel
Strand 4
B
518 520parallel
Strand 5
B
552 556parallel
Strand 6
B
582 586parallel
Strand 7
B
614 618parallel
Strand 8
B
645 649parallel
Strand 9
B
675 677parallel
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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
478 480first strand
Strand 2
B
502 506parallel
Strand 3
B
531 535parallel
Strand 4
B
563 566parallel
Strand 5
B
591 593parallel
Strand 6
B
623 626parallel
Strand 7
B
661 664parallel
Strand 8
B
682 686parallel
Strand 9
B
707 710parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
699 700first strand
Strand 2
B
725 726parallel
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