Analysis of interatomic Contacts of Structural Units in PDB entry:
5GKV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GKV entry

There is 1 chain in PDB entry 5GKV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LEU 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5GKV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 11Right-handed 310
Helix 2
AA2
A
12 24Right-handed alpha
Helix 3
AA3
A
25 27Right-handed 310
Helix 4
AA4
A
69 84Right-handed alpha
Helix 5
AA5
A
92 97Right-handed alpha
Helix 6
AA6
A
98 102Right-handed 310
Helix 7
AA7
A
109 115Right-handed alpha
Helix 8
AA8
A
130 133Right-handed 310
Helix 9
AA9
A
134 145Right-handed alpha
Helix 10
AB1
A
160 175Right-handed alpha
Helix 11
AB2
A
177 186Right-handed alpha
Helix 12
AB3
A
186 191Right-handed alpha
Helix 13
AB4
A
199 206Right-handed 310
Helix 14
AB5
A
222 230Right-handed alpha
Helix 15
AB6
A
240 247Right-handed alpha
Helix 16
AB7
A
257 270Right-handed alpha
Helix 17
AB8
A
281 290Right-handed alpha
Helix 18
AB9
A
360 373Right-handed alpha
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There are 4 sheets in PDB entry 5GKV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
40 48anti-parallel
Strand 3
A
30 37anti-parallel
Strand 4
A
344 350anti-parallel
Strand 5
A
335 339anti-parallel
Strand 6
A
326 329anti-parallel
Strand 7
A
311 312anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
254 256anti-parallel
Strand 3
A
194 196anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 274first strand
Strand 2
A
277 278anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 296first strand
Strand 2
A
303 306anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il