Analysis of interatomic Contacts of Structural Units in PDB entry:
5GKX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GKX entry

There are 2 chains in PDB entry 5GKX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 12LEU 270
B
 ASN 12LEU 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5GKX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 23Right-handed alpha
Helix 2
AA2
A
30 40Right-handed alpha
Helix 3
AA3
A
62 76Right-handed alpha
Helix 4
AA4
A
85 92Right-handed alpha
Helix 5
AA5
A
93 96Right-handed 310
Helix 6
AA6
A
104 108Right-handed 310
Helix 7
AA7
A
139 149Right-handed alpha
Helix 8
AA8
A
163 166Right-handed 310
Helix 9
AA9
A
167 175Right-handed alpha
Helix 10
AB1
A
177 182Right-handed alpha
Helix 11
AB2
A
195 212Right-handed alpha
Helix 12
AB3
A
220 231Right-handed alpha
Helix 13
AB4
A
250 269Right-handed alpha
Helix 14
AB5
B
14 23Right-handed alpha
Helix 15
AB6
B
30 40Right-handed alpha
Helix 16
AB7
B
62 76Right-handed alpha
Helix 17
AB8
B
85 93Right-handed alpha
Helix 18
AB9
B
94 96Right-handed 310
Helix 19
AC1
B
104 108Right-handed 310
Helix 20
AC2
B
139 149Right-handed alpha
Helix 21
AC3
B
163 166Right-handed 310
Helix 22
AC4
B
167 175Right-handed alpha
Helix 23
AC5
B
177 182Right-handed alpha
Helix 24
AC6
B
195 212Right-handed alpha
Helix 25
AC7
B
220 231Right-handed alpha
Helix 26
AC8
B
250 270Right-handed alpha
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There are 6 sheets in PDB entry 5GKX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
43 48parallel
Strand 3
A
110 114parallel
Strand 4
A
152 156parallel
Strand 5
A
189 192parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
57 58anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
248 249anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 83first strand
Strand 2
B
43 48parallel
Strand 3
B
110 114parallel
Strand 4
B
152 156parallel
Strand 5
B
189 192parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
57 58anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 245first strand
Strand 2
B
248 249anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il