Analysis of interatomic Contacts of Structural Units in PDB entry:
5GL2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GL2 entry

There are 6 chains in PDB entry 5GL2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 269
B	ILE 2	LEU 269
C	ILE 2	LEU 269
D	MET 1	LEU 269
E	MET 1	LEU 269
F	MET 1	LEU 269

There are 84 helices in PDB entry 5GL2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	6	Right-handed alpha
Helix 2	AA2	A	12	26	Right-handed alpha
Helix 3	AA3	A	28	40	Right-handed alpha
Helix 4	AA4	A	62	76	Right-handed alpha
Helix 5	AA5	A	85	93	Right-handed alpha
Helix 6	AA6	A	94	96	Right-handed 310
Helix 7	AA7	A	104	108	Right-handed 310
Helix 8	AA8	A	139	149	Right-handed alpha
Helix 9	AA9	A	163	166	Right-handed 310
Helix 10	AB1	A	167	175	Right-handed alpha
Helix 11	AB2	A	177	182	Right-handed alpha
Helix 12	AB3	A	195	212	Right-handed alpha
Helix 13	AB4	A	220	231	Right-handed alpha
Helix 14	AB5	A	249	269	Right-handed alpha
Helix 15	AB6	B	4	8	Right-handed 310
Helix 16	AB7	B	13	26	Right-handed alpha
Helix 17	AB8	B	28	39	Right-handed alpha
Helix 18	AB9	B	62	76	Right-handed alpha
Helix 19	AC1	B	85	93	Right-handed alpha
Helix 20	AC2	B	94	96	Right-handed 310
Helix 21	AC3	B	104	108	Right-handed 310
Helix 22	AC4	B	139	149	Right-handed alpha
Helix 23	AC5	B	163	166	Right-handed 310
Helix 24	AC6	B	167	175	Right-handed alpha
Helix 25	AC7	B	177	182	Right-handed alpha
Helix 26	AC8	B	195	212	Right-handed alpha
Helix 27	AC9	B	220	231	Right-handed alpha
Helix 28	AD1	B	250	269	Right-handed alpha
Helix 29	AD2	C	4	8	Right-handed 310
Helix 30	AD3	C	12	26	Right-handed alpha
Helix 31	AD4	C	28	39	Right-handed alpha
Helix 32	AD5	C	62	76	Right-handed alpha
Helix 33	AD6	C	85	93	Right-handed alpha
Helix 34	AD7	C	94	96	Right-handed 310
Helix 35	AD8	C	104	108	Right-handed 310
Helix 36	AD9	C	139	148	Right-handed alpha
Helix 37	AE1	C	163	166	Right-handed 310
Helix 38	AE2	C	167	175	Right-handed alpha
Helix 39	AE3	C	177	182	Right-handed alpha
Helix 40	AE4	C	195	212	Right-handed alpha
Helix 41	AE5	C	220	231	Right-handed alpha
Helix 42	AE6	C	250	269	Right-handed alpha
Helix 43	AE7	D	2	6	Right-handed alpha
Helix 44	AE8	D	12	26	Right-handed alpha
Helix 45	AE9	D	28	40	Right-handed alpha
Helix 46	AF1	D	62	76	Right-handed alpha
Helix 47	AF2	D	85	93	Right-handed alpha
Helix 48	AF3	D	94	96	Right-handed 310
Helix 49	AF4	D	104	108	Right-handed 310
Helix 50	AF5	D	139	149	Right-handed alpha
Helix 51	AF6	D	163	166	Right-handed 310
Helix 52	AF7	D	167	175	Right-handed alpha
Helix 53	AF8	D	177	182	Right-handed alpha
Helix 54	AF9	D	195	212	Right-handed alpha
Helix 55	AG1	D	220	231	Right-handed alpha
Helix 56	AG2	D	250	268	Right-handed alpha
Helix 57	AG3	E	2	6	Right-handed alpha
Helix 58	AG4	E	15	26	Right-handed alpha
Helix 59	AG5	E	28	39	Right-handed alpha
Helix 60	AG6	E	62	76	Right-handed alpha
Helix 61	AG7	E	85	93	Right-handed alpha
Helix 62	AG8	E	94	96	Right-handed 310
Helix 63	AG9	E	104	108	Right-handed 310
Helix 64	AH1	E	139	149	Right-handed alpha
Helix 65	AH2	E	163	166	Right-handed 310
Helix 66	AH3	E	167	175	Right-handed alpha
Helix 67	AH4	E	177	182	Right-handed alpha
Helix 68	AH5	E	195	212	Right-handed alpha
Helix 69	AH6	E	220	231	Right-handed alpha
Helix 70	AH7	E	249	269	Right-handed alpha
Helix 71	AH8	F	2	6	Right-handed alpha
Helix 72	AH9	F	12	26	Right-handed alpha
Helix 73	AI1	F	28	40	Right-handed alpha
Helix 74	AI2	F	62	76	Right-handed alpha
Helix 75	AI3	F	85	93	Right-handed alpha
Helix 76	AI4	F	94	96	Right-handed 310
Helix 77	AI5	F	104	108	Right-handed 310
Helix 78	AI6	F	139	149	Right-handed alpha
Helix 79	AI7	F	163	166	Right-handed 310
Helix 80	AI8	F	167	175	Right-handed alpha
Helix 81	AI9	F	177	182	Right-handed alpha
Helix 82	AJ1	F	195	212	Right-handed alpha
Helix 83	AJ2	F	220	231	Right-handed alpha
Helix 84	AJ3	F	250	269	Right-handed alpha

There are 16 sheets in PDB entry 5GL2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	83	first strand
Strand 2	A	43	48	parallel
Strand 3	A	110	114	parallel
Strand 4	A	152	156	parallel
Strand 5	A	189	192	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	57	58	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	83	first strand
Strand 2	B	43	48	parallel
Strand 3	B	110	114	parallel
Strand 4	B	152	156	parallel
Strand 5	B	189	192	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	52	first strand
Strand 2	B	57	58	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	245	first strand
Strand 2	B	248	249	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	83	first strand
Strand 2	C	43	48	parallel
Strand 3	C	110	114	parallel
Strand 4	C	152	156	parallel
Strand 5	C	189	192	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	57	58	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	245	first strand
Strand 2	C	248	249	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	83	first strand
Strand 2	D	43	48	parallel
Strand 3	D	110	114	parallel
Strand 4	D	152	156	parallel
Strand 5	D	189	192	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	52	first strand
Strand 2	D	57	58	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	245	first strand
Strand 2	D	248	249	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	83	first strand
Strand 2	E	43	48	parallel
Strand 3	E	110	114	parallel
Strand 4	E	152	156	parallel
Strand 5	E	189	192	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	52	first strand
Strand 2	E	57	58	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	79	83	first strand
Strand 2	F	43	48	parallel
Strand 3	F	110	114	parallel
Strand 4	F	152	156	parallel
Strand 5	F	189	192	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	52	first strand
Strand 2	F	57	58	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	244	245	first strand
Strand 2	F	248	249	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GL2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GL2