Analysis of interatomic Contacts of Structural Units in PDB entry:
5GL5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GL5 entry

There are 2 chains in PDB entry 5GL5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 737LYS 1171
B
 SER 739PRO 1173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 5GL5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
749 766Right-handed alpha
Helix 2
AA2
A
775 777Right-handed 310
Helix 3
AA3
A
778 785Right-handed alpha
Helix 4
AA4
A
796 806Right-handed alpha
Helix 5
AA5
A
809 840Right-handed alpha
Helix 6
AA6
A
848 851Right-handed 310
Helix 7
AA7
A
852 861Right-handed alpha
Helix 8
AA8
A
890 920Right-handed alpha
Helix 9
AA9
A
927 932Right-handed alpha
Helix 10
AB1
A
933 936Right-handed 310
Helix 11
AB2
A
974 987Right-handed alpha
Helix 12
AB3
A
1003 1018Right-handed alpha
Helix 13
AB4
A
1055 1060Right-handed alpha
Helix 14
AB5
A
1061 1063Right-handed 310
Helix 15
AB6
A
1071 1081Right-handed alpha
Helix 16
AB7
A
1092 1104Right-handed alpha
Helix 17
AB8
A
1114 1128Right-handed alpha
Helix 18
AB9
A
1128 1145Right-handed alpha
Helix 19
AC1
A
1146 1170Right-handed alpha
Helix 20
AC2
B
749 766Right-handed alpha
Helix 21
AC3
B
775 777Right-handed 310
Helix 22
AC4
B
778 785Right-handed alpha
Helix 23
AC5
B
796 805Right-handed alpha
Helix 24
AC6
B
810 840Right-handed alpha
Helix 25
AC7
B
848 851Right-handed 310
Helix 26
AC8
B
852 861Right-handed alpha
Helix 27
AC9
B
890 920Right-handed alpha
Helix 28
AD1
B
927 932Right-handed alpha
Helix 29
AD2
B
933 936Right-handed 310
Helix 30
AD3
B
967 971Right-handed 310
Helix 31
AD4
B
974 987Right-handed alpha
Helix 32
AD5
B
1003 1019Right-handed alpha
Helix 33
AD6
B
1055 1060Right-handed alpha
Helix 34
AD7
B
1061 1063Right-handed 310
Helix 35
AD8
B
1071 1081Right-handed alpha
Helix 36
AD9
B
1092 1104Right-handed alpha
Helix 37
AE1
B
1114 1128Right-handed alpha
Helix 38
AE2
B
1128 1145Right-handed alpha
Helix 39
AE3
B
1146 1170Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5GL5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
788 791first strand
Strand 2
A
769 774parallel
Strand 3
A
741 745parallel
Strand 4
A
843 846parallel
Strand 5
A
864 868parallel
Strand 6
A
938 940parallel
Strand 7
A
957 959parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1048 1050first strand
Strand 2
A
1020 1025parallel
Strand 3
A
990 995parallel
Strand 4
A
1065 1068parallel
Strand 5
A
1085 1087parallel
Strand 6
A
1107 1109parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
999 1000first strand
Strand 2
A
1028 1029parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
788 791first strand
Strand 2
B
769 774parallel
Strand 3
B
741 745parallel
Strand 4
B
843 846parallel
Strand 5
B
864 868parallel
Strand 6
B
938 940parallel
Strand 7
B
957 959parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1048 1050first strand
Strand 2
B
1021 1025parallel
Strand 3
B
991 995parallel
Strand 4
B
1065 1068parallel
Strand 5
B
1085 1087parallel
Strand 6
B
1107 1109parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
999 1000first strand
Strand 2
B
1028 1029parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il