Analysis of interatomic Contacts of Structural Units in PDB entry:
5GLA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GLA entry

There are 2 chains in PDB entry 5GLA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 22VAL 301
B
 GLY 22VAL 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5GLA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 39Right-handed alpha
Helix 2
AA2
A
71 87Right-handed alpha
Helix 3
AA3
A
98 102Right-handed 310
Helix 4
AA4
A
108 112Right-handed 310
Helix 5
AA5
A
119 129Right-handed alpha
Helix 6
AA6
A
131 143Right-handed alpha
Helix 7
AA7
A
144 155Right-handed alpha
Helix 8
AA8
A
167 171Right-handed 310
Helix 9
AA9
A
192 205Right-handed alpha
Helix 10
AB1
A
210 223Right-handed alpha
Helix 11
AB2
A
230 235Right-handed alpha
Helix 12
AB3
A
285 301Right-handed alpha
Helix 13
AB4
B
23 39Right-handed alpha
Helix 14
AB5
B
71 85Right-handed alpha
Helix 15
AB6
B
98 102Right-handed 310
Helix 16
AB7
B
108 113Right-handed 310
Helix 17
AB8
B
119 129Right-handed alpha
Helix 18
AB9
B
131 143Right-handed alpha
Helix 19
AC1
B
144 155Right-handed alpha
Helix 20
AC2
B
192 205Right-handed alpha
Helix 21
AC3
B
210 223Right-handed alpha
Helix 22
AC4
B
230 235Right-handed 310
Helix 23
AC5
B
285 301Right-handed alpha
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There are 6 sheets in PDB entry 5GLA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
43 51anti-parallel
Strand 3
A
269 277anti-parallel
Strand 4
A
253 261anti-parallel
Strand 5
A
240 248anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
190 191anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
114 118anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
B
43 51anti-parallel
Strand 3
B
269 277anti-parallel
Strand 4
B
253 261anti-parallel
Strand 5
B
240 248anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
190 191anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
B
114 118anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il