Analysis of interatomic Contacts of Structural Units in PDB entry:
5GLE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GLE entry

There are 2 chains in PDB entry 5GLE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 208
B
 MET 1THR 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5GLE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 17Right-handed 310
Helix 2
AA2
A
39 44Right-handed alpha
Helix 3
AA3
A
52 70Right-handed alpha
Helix 4
AA4
A
84 89Right-handed alpha
Helix 5
AA5
A
90 96Right-handed alpha
Helix 6
AA6
A
106 110Right-handed 310
Helix 7
AA7
A
130 139Right-handed alpha
Helix 8
AA8
A
152 164Right-handed alpha
Helix 9
AA9
A
179 194Right-handed alpha
Helix 10
AB1
A
199 208Right-handed alpha
Helix 11
AB2
B
13 17Right-handed 310
Helix 12
AB3
B
39 44Right-handed alpha
Helix 13
AB4
B
52 70Right-handed alpha
Helix 14
AB5
B
84 89Right-handed alpha
Helix 15
AB6
B
90 96Right-handed alpha
Helix 16
AB7
B
106 110Right-handed 310
Helix 17
AB8
B
130 139Right-handed alpha
Helix 18
AB9
B
152 164Right-handed alpha
Helix 19
AC1
B
179 194Right-handed alpha
Helix 20
AC2
B
199 208Right-handed alpha
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There are 2 sheets in PDB entry 5GLE. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
74 78parallel
Strand 3
A
31 36parallel
Strand 4
A
142 147parallel
Strand 5
A
167 175parallel
Strand 6
A
196 198parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 119first strand
Strand 2
B
74 78parallel
Strand 3
B
31 36parallel
Strand 4
B
142 148parallel
Strand 5
B
167 176parallel
Strand 6
B
196 198parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il