Analysis of interatomic Contacts of Structural Units in PDB entry:
5GLF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GLF entry

There are 8 chains in PDB entry 5GLF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 23	GLU 192
B	ARG 239	ASP 250
C	ARG 22	GLU 192
D	HIS 240	ASP 250
E	ASN 24	GLU 192
F	HIS 240	GLY 249
G	PRO 23	LYS 190
H	HIS 240	GLY 249

There are 20 helices in PDB entry 5GLF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	50	Right-handed alpha
Helix 2	AA2	A	85	93	Right-handed alpha
Helix 3	AA3	A	120	123	Right-handed 310
Helix 4	AA4	A	129	134	Right-handed alpha
Helix 5	AA5	A	134	140	Right-handed alpha
Helix 6	AA6	C	42	50	Right-handed alpha
Helix 7	AA7	C	85	92	Right-handed alpha
Helix 8	AA8	C	122	126	Right-handed 310
Helix 9	AA9	C	129	134	Right-handed alpha
Helix 10	AB1	C	134	140	Right-handed alpha
Helix 11	AB2	E	42	50	Right-handed alpha
Helix 12	AB3	E	85	93	Right-handed alpha
Helix 13	AB4	E	120	123	Right-handed 310
Helix 14	AB5	E	129	134	Right-handed alpha
Helix 15	AB6	E	134	140	Right-handed alpha
Helix 16	AB7	G	42	50	Right-handed alpha
Helix 17	AB8	G	85	92	Right-handed alpha
Helix 18	AB9	G	120	123	Right-handed 310
Helix 19	AC1	G	129	134	Right-handed alpha
Helix 20	AC2	G	134	140	Right-handed alpha

There are 12 sheets in PDB entry 5GLF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	29	first strand
Strand 2	A	81	83	parallel
Strand 3	A	38	41	anti-parallel
Strand 4	A	66	73	parallel
Strand 5	A	56	60	anti-parallel
Strand 6	A	99	104	anti-parallel
Strand 7	A	24	29	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	156	first strand
Strand 2	A	159	169	anti-parallel
Strand 3	A	113	118	anti-parallel
Strand 4	A	181	183	parallel
Strand 5	B	245	247	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	147	first strand
Strand 2	A	173	176	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	29	first strand
Strand 2	C	81	83	parallel
Strand 3	C	38	41	anti-parallel
Strand 4	C	66	73	parallel
Strand 5	C	56	60	anti-parallel
Strand 6	C	99	104	anti-parallel
Strand 7	C	24	29	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	154	first strand
Strand 2	C	161	169	anti-parallel
Strand 3	C	113	118	anti-parallel
Strand 4	C	181	183	parallel
Strand 5	D	245	247	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	147	first strand
Strand 2	C	173	176	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	29	first strand
Strand 2	E	81	83	parallel
Strand 3	E	38	41	anti-parallel
Strand 4	E	66	73	parallel
Strand 5	E	56	60	anti-parallel
Strand 6	E	99	104	anti-parallel
Strand 7	E	25	29	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	155	first strand
Strand 2	E	160	169	anti-parallel
Strand 3	E	113	118	anti-parallel
Strand 4	E	181	183	parallel
Strand 5	F	245	247	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	147	first strand
Strand 2	E	173	176	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	29	first strand
Strand 2	G	81	83	parallel
Strand 3	G	38	41	anti-parallel
Strand 4	G	66	73	parallel
Strand 5	G	56	60	anti-parallel
Strand 6	G	99	104	anti-parallel
Strand 7	G	25	29	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	156	first strand
Strand 2	G	159	169	anti-parallel
Strand 3	G	113	118	anti-parallel
Strand 4	G	181	183	parallel
Strand 5	H	245	247	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	144	147	first strand
Strand 2	G	173	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GLF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GLF