Analysis of interatomic Contacts of Structural Units in PDB entry:
5GLI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GLI entry

There is 1 chain in PDB entry 5GLI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 85CYS 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5GLI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
91 129Right-handed alpha
Helix 2
AA2
A
129 134Right-handed alpha
Helix 3
AA3
A
137 165Right-handed alpha
Helix 4
AA4
A
170 204Right-handed alpha
Helix 5
AA5
A
215 232Right-handed alpha
Helix 6
AA6
A
233 239Right-handed alpha
Helix 7
AA7
A
263 272Right-handed alpha
Helix 8
AA8
A
272 281Right-handed alpha
Helix 9
AA9
A
282 1011Right-handed alpha
Helix 10
AB1
A
1017 1038Right-handed alpha
Helix 11
AB2
A
1041 1048Right-handed alpha
Helix 12
AB3
A
1049 1069Right-handed alpha
Helix 13
AB4
A
1071 1080Right-handed alpha
Helix 14
AB5
A
1082 1092Right-handed alpha
Helix 15
AB6
A
1093 1099Right-handed alpha
Helix 16
AB7
A
1099 1113Right-handed alpha
Helix 17
AB8
A
1115 311Right-handed 310
Helix 18
AB9
A
312 350Right-handed alpha
Helix 19
AC1
A
356 390Right-handed alpha
Helix 20
AC2
A
390 403Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5GLI.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 247first strand
Strand 2
A
250 257anti-parallel
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