Analysis of interatomic Contacts of Structural Units in PDB entry:
5GLJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GLJ entry

There are 4 chains in PDB entry 5GLJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -3	PRO 1178
B	SER 1086	PRO 1178
C	MET -1	PRO 1178
D	GLY -3	PRO 1178

There are 8 helices in PDB entry 5GLJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1130	1136	Right-handed alpha
Helix 2	AA2	A	1156	1167	Right-handed alpha
Helix 3	AA3	B	1130	1136	Right-handed alpha
Helix 4	AA4	B	1156	1167	Right-handed alpha
Helix 5	AA5	C	1130	1136	Right-handed alpha
Helix 6	AA6	C	1156	1167	Right-handed alpha
Helix 7	AA7	D	1130	1136	Right-handed alpha
Helix 8	AA8	D	1156	1167	Right-handed alpha

There are 8 sheets in PDB entry 5GLJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1090	1097	first strand
Strand 2	A	1170	1177	anti-parallel
Strand 3	A	1143	1147	anti-parallel
Strand 4	A	1150	1151	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1106	1109	first strand
Strand 2	A	1122	1126	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1090	1097	first strand
Strand 2	B	1170	1177	anti-parallel
Strand 3	B	1143	1147	anti-parallel
Strand 4	B	1150	1151	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1106	1109	first strand
Strand 2	B	1122	1126	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1090	1097	first strand
Strand 2	C	1170	1177	anti-parallel
Strand 3	C	1143	1147	anti-parallel
Strand 4	C	1150	1151	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1106	1109	first strand
Strand 2	C	1122	1126	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1090	1097	first strand
Strand 2	D	1170	1177	anti-parallel
Strand 3	D	1143	1147	anti-parallel
Strand 4	D	1150	1151	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1106	1110	first strand
Strand 2	D	1121	1126	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GLJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GLJ