Analysis of interatomic Contacts of Structural Units in PDB entry:
5GLM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GLM entry

There are 2 chains in PDB entry 5GLM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 40GLU 369
B
 HIS 45GLU 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5GLM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
115 117Right-handed 310
Helix 2
AA2
A
195 203Right-handed 310
Helix 3
AA3
A
286 289Right-handed 310
Helix 4
AA4
B
115 117Right-handed 310
Helix 5
AA5
B
195 204Right-handed 310
Helix 6
AA6
B
286 289Right-handed 310
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There are 12 sheets in PDB entry 5GLM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 63first strand
Strand 2
A
66 74anti-parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
105 113anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
135 144anti-parallel
Strand 3
A
128 132anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
135 144anti-parallel
Strand 3
A
149 156anti-parallel
Strand 4
A
164 165anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 182first strand
Strand 2
A
188 192anti-parallel
Strand 3
A
229 232anti-parallel
Strand 4
A
245 246anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
303 310parallel
Strand 3
A
291 296anti-parallel
Strand 4
A
278 284anti-parallel
Strand 5
A
268 275anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 325first strand
Strand 2
A
328 335anti-parallel
Strand 3
A
347 353anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 63first strand
Strand 2
B
66 74anti-parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
105 113anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 122first strand
Strand 2
B
135 144anti-parallel
Strand 3
B
128 132anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 122first strand
Strand 2
B
135 144anti-parallel
Strand 3
B
149 156anti-parallel
Strand 4
B
164 165anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 182first strand
Strand 2
B
188 192anti-parallel
Strand 3
B
229 232anti-parallel
Strand 4
B
245 246anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 250first strand
Strand 2
B
303 310parallel
Strand 3
B
291 296anti-parallel
Strand 4
B
278 284anti-parallel
Strand 5
B
268 275anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 325first strand
Strand 2
B
328 335anti-parallel
Strand 3
B
347 353anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il