Analysis of interatomic Contacts of Structural Units in PDB entry:
5GM4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GM4 entry

There are 7 chains in PDB entry 5GM4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 3	GLN 221
B	GLN 4	GLN 221
C	ALA 3	GLN 221
D	GLN 4	GLN 221
E	ALA 3	GLN 221
F	GLN 4	GLN 221
G	GLN 4	GLN 221

There are 24 helices in PDB entry 5GM4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	29	Right-handed 310
Helix 2	AA2	A	76	78	Right-handed 310
Helix 3	AA3	A	174	185	Right-handed alpha
Helix 4	AA4	A	188	191	Right-handed 310
Helix 5	AA5	B	25	29	Right-handed 310
Helix 6	AA6	B	76	78	Right-handed 310
Helix 7	AA7	B	174	185	Right-handed alpha
Helix 8	AA8	C	25	29	Right-handed 310
Helix 9	AA9	C	76	78	Right-handed 310
Helix 10	AB1	C	174	186	Right-handed alpha
Helix 11	AB2	D	25	29	Right-handed 310
Helix 12	AB3	D	76	78	Right-handed 310
Helix 13	AB4	D	174	185	Right-handed alpha
Helix 14	AB5	E	25	29	Right-handed 310
Helix 15	AB6	E	76	78	Right-handed 310
Helix 16	AB7	E	174	185	Right-handed alpha
Helix 17	AB8	E	188	191	Right-handed 310
Helix 18	AB9	F	25	29	Right-handed 310
Helix 19	AC1	F	76	78	Right-handed 310
Helix 20	AC2	F	174	186	Right-handed alpha
Helix 21	AC3	F	188	191	Right-handed 310
Helix 22	AC4	G	25	29	Right-handed 310
Helix 23	AC5	G	76	78	Right-handed 310
Helix 24	AC6	G	174	186	Right-handed alpha

There are 21 sheets in PDB entry 5GM4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	A	30	40	anti-parallel
Strand 3	A	45	54	anti-parallel
Strand 4	A	193	218	anti-parallel
Strand 5	A	64	68	anti-parallel
Strand 6	A	17	20	anti-parallel
Strand 7	A	11	14	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	74	first strand
Strand 2	A	193	218	anti-parallel
Strand 3	A	95	105	anti-parallel
Strand 4	A	117	126	anti-parallel
Strand 5	A	157	162	parallel
Strand 6	A	144	152	anti-parallel
Strand 7	A	134	141	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	A	30	40	anti-parallel
Strand 3	A	45	54	anti-parallel
Strand 4	A	193	218	anti-parallel
Strand 5	A	82	89	anti-parallel
Strand 6	A	169	173	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	14	first strand
Strand 2	B	17	20	anti-parallel
Strand 3	B	64	68	anti-parallel
Strand 4	B	193	218	anti-parallel
Strand 5	B	73	74	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	41	first strand
Strand 2	B	44	54	anti-parallel
Strand 3	B	193	218	anti-parallel
Strand 4	B	82	89	anti-parallel
Strand 5	B	169	173	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	41	first strand
Strand 2	B	44	54	anti-parallel
Strand 3	B	193	218	anti-parallel
Strand 4	B	95	105	anti-parallel
Strand 5	B	117	126	anti-parallel
Strand 6	B	156	162	parallel
Strand 7	B	144	153	anti-parallel
Strand 8	B	134	141	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	17	20	anti-parallel
Strand 3	C	64	68	anti-parallel
Strand 4	C	193	218	anti-parallel
Strand 5	C	73	74	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	41	first strand
Strand 2	C	44	54	anti-parallel
Strand 3	C	193	218	anti-parallel
Strand 4	C	82	89	anti-parallel
Strand 5	C	169	173	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	41	first strand
Strand 2	C	44	54	anti-parallel
Strand 3	C	193	218	anti-parallel
Strand 4	C	95	105	anti-parallel
Strand 5	C	117	126	anti-parallel
Strand 6	C	157	162	parallel
Strand 7	C	144	152	anti-parallel
Strand 8	C	134	141	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	17	20	anti-parallel
Strand 3	D	64	68	anti-parallel
Strand 4	D	193	218	anti-parallel
Strand 5	D	73	74	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	40	first strand
Strand 2	D	45	54	anti-parallel
Strand 3	D	193	218	anti-parallel
Strand 4	D	82	89	anti-parallel
Strand 5	D	169	173	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	40	first strand
Strand 2	D	45	54	anti-parallel
Strand 3	D	193	218	anti-parallel
Strand 4	D	95	105	anti-parallel
Strand 5	D	117	126	anti-parallel
Strand 6	D	156	162	parallel
Strand 7	D	144	153	anti-parallel
Strand 8	D	134	141	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	5	first strand
Strand 2	E	30	41	anti-parallel
Strand 3	E	44	54	anti-parallel
Strand 4	E	193	218	anti-parallel
Strand 5	E	64	68	anti-parallel
Strand 6	E	17	20	anti-parallel
Strand 7	E	11	14	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	73	74	first strand
Strand 2	E	193	218	anti-parallel
Strand 3	E	95	105	anti-parallel
Strand 4	E	117	126	anti-parallel
Strand 5	E	157	162	parallel
Strand 6	E	144	152	anti-parallel
Strand 7	E	134	141	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	5	first strand
Strand 2	E	30	41	anti-parallel
Strand 3	E	44	54	anti-parallel
Strand 4	E	193	218	anti-parallel
Strand 5	E	82	89	anti-parallel
Strand 6	E	169	173	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	14	first strand
Strand 2	F	17	20	anti-parallel
Strand 3	F	64	68	anti-parallel
Strand 4	F	193	218	anti-parallel
Strand 5	F	73	74	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	40	first strand
Strand 2	F	45	54	anti-parallel
Strand 3	F	193	218	anti-parallel
Strand 4	F	82	89	anti-parallel
Strand 5	F	169	173	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	40	first strand
Strand 2	F	45	54	anti-parallel
Strand 3	F	193	218	anti-parallel
Strand 4	F	94	105	anti-parallel
Strand 5	F	117	126	anti-parallel
Strand 6	F	156	162	parallel
Strand 7	F	144	153	anti-parallel
Strand 8	F	134	141	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	14	first strand
Strand 2	G	17	20	anti-parallel
Strand 3	G	64	68	anti-parallel
Strand 4	G	193	218	anti-parallel
Strand 5	G	73	74	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	40	first strand
Strand 2	G	45	54	anti-parallel
Strand 3	G	193	218	anti-parallel
Strand 4	G	82	89	anti-parallel
Strand 5	G	169	173	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	40	first strand
Strand 2	G	45	54	anti-parallel
Strand 3	G	193	218	anti-parallel
Strand 4	G	95	105	anti-parallel
Strand 5	G	117	126	anti-parallel
Strand 6	G	156	162	parallel
Strand 7	G	144	153	anti-parallel
Strand 8	G	134	141	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GM4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GM4