Analysis of interatomic Contacts of Structural Units in PDB entry:
5GM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GM9 entry

There is 1 chain in PDB entry 5GM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PRO 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5GM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 20Right-handed 310
Helix 2
AA2
A
47 51Right-handed 310
Helix 3
AA3
A
82 87Right-handed alpha
Helix 4
AA4
A
134 141Right-handed alpha
Helix 5
AA5
A
153 160Right-handed 310
Helix 6
AA6
A
161 163Right-handed 310
Helix 7
AA7
A
164 174Right-handed alpha
Helix 8
AA8
A
191 199Right-handed alpha
Helix 9
AA9
A
204 208Right-handed 310
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There is 1 sheet (AA1) in PDB entry 5GM9.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 66first strand
Strand 2
A
69 77anti-parallel
Strand 3
A
120 124anti-parallel
Strand 4
A
2 10parallel
Strand 5
A
183 188anti-parallel
Strand 6
A
90 95anti-parallel
Strand 7
A
104 111anti-parallel
Strand 8
A
69 77parallel
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