Analysis of interatomic Contacts of Structural Units in PDB entry:
5GMC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GMC entry

There are 4 chains in PDB entry 5GMC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -6LYS 167
B
 PHE -3LYS 167
C
 SER -1LYS 167
D
 TYR -4LYS 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 5GMC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-6 1Right-handed alpha
Helix 2
AA2
A
14 28Right-handed alpha
Helix 3
AA3
A
43 50Right-handed alpha
Helix 4
AA4
A
53 59Right-handed alpha
Helix 5
AA5
A
65 71Right-handed alpha
Helix 6
AA6
A
92 106Right-handed alpha
Helix 7
AA7
A
122 127Right-handed alpha
Helix 8
AA8
A
145 165Right-handed alpha
Helix 9
AA9
B
-2 3Right-handed alpha
Helix 10
AB1
B
14 28Right-handed alpha
Helix 11
AB2
B
43 51Right-handed alpha
Helix 12
AB3
B
53 59Right-handed alpha
Helix 13
AB4
B
65 71Right-handed alpha
Helix 14
AB5
B
92 105Right-handed alpha
Helix 15
AB6
B
106 108Right-handed 310
Helix 16
AB7
B
122 127Right-handed alpha
Helix 17
AB8
B
145 165Right-handed alpha
Helix 18
AB9
C
-1 3Right-handed 310
Helix 19
AC1
C
14 28Right-handed alpha
Helix 20
AC2
C
43 50Right-handed alpha
Helix 21
AC3
C
53 60Right-handed alpha
Helix 22
AC4
C
65 71Right-handed alpha
Helix 23
AC5
C
92 104Right-handed alpha
Helix 24
AC6
C
105 108Right-handed 310
Helix 25
AC7
C
122 127Right-handed alpha
Helix 26
AC8
C
145 165Right-handed alpha
Helix 27
AC9
D
-3 3Right-handed 310
Helix 28
AD1
D
14 28Right-handed alpha
Helix 29
AD2
D
43 50Right-handed alpha
Helix 30
AD3
D
53 60Right-handed alpha
Helix 31
AD4
D
65 71Right-handed alpha
Helix 32
AD5
D
92 106Right-handed alpha
Helix 33
AD6
D
122 127Right-handed alpha
Helix 34
AD7
D
145 164Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5GMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
32 36parallel
Strand 3
A
5 10parallel
Strand 4
A
110 114parallel
Strand 5
A
75 79parallel
Strand 6
A
131 133parallel
Strand 7
A
90 91parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
32 36parallel
Strand 3
B
5 10parallel
Strand 4
B
110 114parallel
Strand 5
B
75 79parallel
Strand 6
B
131 133parallel
Strand 7
B
90 91parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 63first strand
Strand 2
C
32 36parallel
Strand 3
C
5 10parallel
Strand 4
C
110 114parallel
Strand 5
C
75 79parallel
Strand 6
C
131 133parallel
Strand 7
C
90 91parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
61 63first strand
Strand 2
D
32 36parallel
Strand 3
D
5 10parallel
Strand 4
D
110 114parallel
Strand 5
D
75 79parallel
Strand 6
D
131 133parallel
Strand 7
D
90 91parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il