Analysis of interatomic Contacts of Structural Units in PDB entry:
5GMG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GMG entry

There are 4 chains in PDB entry 5GMG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 28CYS 833
B
 ARG 28CYS 833
C
 U 1 U 4
D
 U 1 U 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5GMG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
81 86Right-handed alpha
Helix 2
AA2
A
168 172Right-handed 310
Helix 3
AA3
A
273 277Right-handed 310
Helix 4
AA4
A
306 311Right-handed 310
Helix 5
AA5
A
326 333Right-handed alpha
Helix 6
AA6
A
334 339Right-handed 310
Helix 7
AA7
A
363 369Right-handed 310
Helix 8
AA8
A
386 394Right-handed 310
Helix 9
AA9
A
414 421Right-handed 310
Helix 10
AB1
A
491 495Right-handed 310
Helix 11
AB2
A
509 514Right-handed 310
Helix 12
AB3
A
577 582Right-handed 310
Helix 13
AB4
A
630 635Right-handed alpha
Helix 14
AB5
A
691 698Right-handed 310
Helix 15
AB6
A
717 721Right-handed 310
Helix 16
AB7
A
768 773Right-handed alpha
Helix 17
AB8
A
788 790Right-handed 310
Helix 18
AB9
A
791 801Right-handed alpha
Helix 19
AC1
A
817 821Right-handed 310
Helix 20
AC2
B
81 86Right-handed alpha
Helix 21
AC3
B
168 172Right-handed 310
Helix 22
AC4
B
273 277Right-handed 310
Helix 23
AC5
B
306 311Right-handed 310
Helix 24
AC6
B
326 333Right-handed alpha
Helix 25
AC7
B
334 339Right-handed 310
Helix 26
AC8
B
363 369Right-handed 310
Helix 27
AC9
B
386 394Right-handed 310
Helix 28
AD1
B
414 421Right-handed 310
Helix 29
AD2
B
491 495Right-handed 310
Helix 30
AD3
B
509 514Right-handed 310
Helix 31
AD4
B
577 582Right-handed 310
Helix 32
AD5
B
630 635Right-handed alpha
Helix 33
AD6
B
691 698Right-handed 310
Helix 34
AD7
B
717 721Right-handed 310
Helix 35
AD8
B
768 773Right-handed alpha
Helix 36
AD9
B
788 790Right-handed 310
Helix 37
AE1
B
791 801Right-handed alpha
Helix 38
AE2
B
817 821Right-handed 310
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There are 10 sheets in PDB entry 5GMG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 28 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
48 50anti-parallel
Strand 3
A
69 71parallel
Strand 4
A
93 95parallel
Strand 5
A
131 133parallel
Strand 6
A
152 154parallel
Strand 7
A
176 178parallel
Strand 8
A
208 210parallel
Strand 9
A
229 231parallel
Strand 10
A
253 255parallel
Strand 11
A
294 296parallel
Strand 12
A
318 320parallel
Strand 13
A
344 346parallel
Strand 14
A
374 376parallel
Strand 15
A
401 403parallel
Strand 16
A
425 427parallel
Strand 17
A
497 499parallel
Strand 18
A
521 523parallel
Strand 19
A
546 548parallel
Strand 20
A
570 572parallel
Strand 21
A
600 602parallel
Strand 22
A
623 625parallel
Strand 23
A
654 656parallel
Strand 24
A
679 681parallel
Strand 25
A
703 705parallel
Strand 26
A
727 729parallel
Strand 27
A
751 753parallel
Strand 28
A
777 779parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
117 118parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
194 195parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 385first strand
Strand 2
A
411 412parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
785 786first strand
Strand 2
A
814 816parallel
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There are 28 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
48 50anti-parallel
Strand 3
B
69 71parallel
Strand 4
B
93 95parallel
Strand 5
B
131 133parallel
Strand 6
B
152 154parallel
Strand 7
B
176 178parallel
Strand 8
B
208 210parallel
Strand 9
B
229 231parallel
Strand 10
B
253 255parallel
Strand 11
B
294 296parallel
Strand 12
B
318 320parallel
Strand 13
B
344 346parallel
Strand 14
B
374 376parallel
Strand 15
B
401 403parallel
Strand 16
B
425 427parallel
Strand 17
B
497 499parallel
Strand 18
B
521 523parallel
Strand 19
B
546 548parallel
Strand 20
B
570 572parallel
Strand 21
B
600 602parallel
Strand 22
B
623 625parallel
Strand 23
B
654 656parallel
Strand 24
B
679 681parallel
Strand 25
B
703 705parallel
Strand 26
B
727 729parallel
Strand 27
B
751 753parallel
Strand 28
B
777 779parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 80first strand
Strand 2
B
117 118parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
194 195parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
384 385first strand
Strand 2
B
411 412parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
785 786first strand
Strand 2
B
814 816parallel
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