Analysis of interatomic Contacts of Structural Units in PDB entry:
5GMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GMJ entry

There are 4 chains in PDB entry 5GMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -14GLU 208
B
 GLU -15GLU 208
C
 LYS 12ILE 19
D
 THR 14ILE 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5GMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 32Right-handed alpha
Helix 2
AA2
A
53 62Right-handed alpha
Helix 3
AA3
A
122 128Right-handed alpha
Helix 4
AA4
A
148 152Right-handed 310
Helix 5
AA5
A
197 201Right-handed 310
Helix 6
AA6
B
26 32Right-handed alpha
Helix 7
AA7
B
53 62Right-handed alpha
Helix 8
AA8
B
107 111Right-handed 310
Helix 9
AA9
B
122 128Right-handed alpha
Helix 10
AB1
B
148 154Right-handed alpha
Helix 11
AB2
B
197 201Right-handed 310
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There are 6 sheets in PDB entry 5GMJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
38 43anti-parallel
Strand 3
A
67 73anti-parallel
Strand 4
A
79 84anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
38 43anti-parallel
Strand 3
A
15 22anti-parallel
Strand 4
A
98 104anti-parallel
Strand 5
D
17 19anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 178first strand
Strand 2
A
161 167anti-parallel
Strand 3
A
134 138anti-parallel
Strand 4
A
113 118anti-parallel
Strand 5
A
192 195anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
B
38 43anti-parallel
Strand 3
B
67 73anti-parallel
Strand 4
B
79 84anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
B
38 43anti-parallel
Strand 3
B
15 22anti-parallel
Strand 4
B
98 104anti-parallel
Strand 5
C
17 19anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 177first strand
Strand 2
B
162 167anti-parallel
Strand 3
B
134 140anti-parallel
Strand 4
B
113 118anti-parallel
Strand 5
B
192 195anti-parallel
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