Analysis of interatomic Contacts of Structural Units in PDB entry:
5GMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GMO entry

There is 1 chain in PDB entry 5GMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5GMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
35 47Right-handed alpha
Helix 3
AA3
A
64 70Right-handed alpha
Helix 4
AA4
A
90 95Right-handed alpha
Helix 5
AA5
A
95 114Right-handed alpha
Helix 6
AA6
A
125 129Right-handed 310
Helix 7
AA7
A
131 136Right-handed alpha
Helix 8
AA8
A
151 157Right-handed alpha
Helix 9
AA9
A
158 182Right-handed alpha
Helix 10
AB1
A
201 205Right-handed 310
Helix 11
AB2
A
213 221Right-handed alpha
Helix 12
AB3
A
238 251Right-handed alpha
Helix 13
AB4
A
252 255Right-handed 310
Helix 14
AB5
A
268 279Right-handed alpha
Helix 15
AB6
A
280 286Right-handed 310
Helix 16
AB7
A
304 312Right-handed alpha
Helix 17
AB8
A
317 331Right-handed alpha
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There are 2 sheets in PDB entry 5GMO. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
28 33parallel
Strand 3
A
4 8parallel
Strand 4
A
74 79parallel
Strand 5
A
119 123parallel
Strand 6
A
186 192parallel
Strand 7
A
258 261parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
232 237parallel
Strand 3
A
265 267anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il