Analysis of interatomic Contacts of Structural Units in PDB entry:
5GMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GMS entry

There are 2 chains in PDB entry 5GMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 297
B
 MET 1GLY 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5GMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 18Right-handed alpha
Helix 2
AA2
A
24 37Right-handed alpha
Helix 3
AA3
A
83 99Right-handed alpha
Helix 4
AA4
A
116 132Right-handed alpha
Helix 5
AA5
A
135 137Right-handed 310
Helix 6
AA6
A
145 161Right-handed alpha
Helix 7
AA7
A
183 188Right-handed alpha
Helix 8
AA8
A
196 209Right-handed alpha
Helix 9
AA9
A
219 223Right-handed 310
Helix 10
AB1
A
241 255Right-handed alpha
Helix 11
AB2
A
270 277Right-handed 310
Helix 12
AB3
A
278 297Right-handed alpha
Helix 13
AB4
B
4 20Right-handed alpha
Helix 14
AB5
B
24 37Right-handed alpha
Helix 15
AB6
B
83 99Right-handed alpha
Helix 16
AB7
B
116 132Right-handed alpha
Helix 17
AB8
B
135 137Right-handed 310
Helix 18
AB9
B
145 161Right-handed alpha
Helix 19
AC1
B
183 188Right-handed alpha
Helix 20
AC2
B
196 209Right-handed alpha
Helix 21
AC3
B
219 223Right-handed 310
Helix 22
AC4
B
241 255Right-handed alpha
Helix 23
AC5
B
270 277Right-handed 310
Helix 24
AC6
B
278 297Right-handed alpha
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There are 2 sheets in PDB entry 5GMS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 52first strand
Strand 2
A
55 61anti-parallel
Strand 3
A
100 105anti-parallel
Strand 4
A
66 74parallel
Strand 5
A
139 144parallel
Strand 6
A
168 172parallel
Strand 7
A
231 236parallel
Strand 8
A
259 264parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 52first strand
Strand 2
B
55 61anti-parallel
Strand 3
B
100 105anti-parallel
Strand 4
B
66 74parallel
Strand 5
B
139 144parallel
Strand 6
B
168 172parallel
Strand 7
B
231 236parallel
Strand 8
B
259 264parallel
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