Analysis of interatomic Contacts of Structural Units in PDB entry:
5GMT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GMT entry

There are 2 chains in PDB entry 5GMT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLY 267
B
 ALA 1PRO 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5GMT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 20Right-handed alpha
Helix 2
AA2
A
21 24Right-handed 310
Helix 3
AA3
A
31 33Right-handed 310
Helix 4
AA4
A
109 114Right-handed 310
Helix 5
AA5
A
133 135Right-handed 310
Helix 6
AA6
A
150 154Right-handed 310
Helix 7
AA7
A
240 244Right-handed 310
Helix 8
AA8
B
15 20Right-handed alpha
Helix 9
AA9
B
21 24Right-handed 310
Helix 10
AB1
B
31 33Right-handed 310
Helix 11
AB2
B
109 114Right-handed 310
Helix 12
AB3
B
133 135Right-handed 310
Helix 13
AB4
B
150 154Right-handed 310
Helix 14
AB5
B
240 244Right-handed 310
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There are 6 sheets in PDB entry 5GMT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
249 260anti-parallel
Strand 3
A
46 51anti-parallel
Strand 4
A
35 38anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
249 260anti-parallel
Strand 3
A
80 90anti-parallel
Strand 4
A
179 187anti-parallel
Strand 5
A
196 204anti-parallel
Strand 6
A
210 217anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
64 69anti-parallel
Strand 3
A
226 235anti-parallel
Strand 4
A
98 106anti-parallel
Strand 5
A
124 131anti-parallel
Strand 6
A
137 142anti-parallel
Strand 7
A
165 167anti-parallel
Strand 8
A
157 158anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
249 260anti-parallel
Strand 3
B
46 51anti-parallel
Strand 4
B
35 38anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
249 260anti-parallel
Strand 3
B
80 90anti-parallel
Strand 4
B
179 187anti-parallel
Strand 5
B
196 204anti-parallel
Strand 6
B
210 217anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
64 69anti-parallel
Strand 3
B
226 235anti-parallel
Strand 4
B
98 106anti-parallel
Strand 5
B
124 131anti-parallel
Strand 6
B
137 142anti-parallel
Strand 7
B
165 167anti-parallel
Strand 8
B
157 158anti-parallel
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