Analysis of interatomic Contacts of Structural Units in PDB entry:
5GMX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GMX entry

There are 2 chains in PDB entry 5GMX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 5LEU 387
B
 ILE 5LEU 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5GMX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
71 87Right-handed alpha
Helix 3
AA3
A
95 100Right-handed alpha
Helix 4
AA4
A
101 105Right-handed 310
Helix 5
AA5
A
112 118Right-handed alpha
Helix 6
AA6
A
131 137Right-handed alpha
Helix 7
AA7
A
137 147Right-handed alpha
Helix 8
AA8
A
164 176Right-handed alpha
Helix 9
AA9
A
182 191Right-handed alpha
Helix 10
AB1
A
206 213Right-handed 310
Helix 11
AB2
A
236 245Right-handed alpha
Helix 12
AB3
A
249 254Right-handed alpha
Helix 13
AB4
A
255 261Right-handed alpha
Helix 14
AB5
A
271 284Right-handed alpha
Helix 15
AB6
A
295 303Right-handed alpha
Helix 16
AB7
A
373 386Right-handed alpha
Helix 17
AB8
B
15 28Right-handed alpha
Helix 18
AB9
B
71 87Right-handed alpha
Helix 19
AC1
B
95 100Right-handed alpha
Helix 20
AC2
B
101 105Right-handed 310
Helix 21
AC3
B
112 118Right-handed alpha
Helix 22
AC4
B
131 137Right-handed alpha
Helix 23
AC5
B
137 147Right-handed alpha
Helix 24
AC6
B
164 177Right-handed alpha
Helix 25
AC7
B
182 191Right-handed alpha
Helix 26
AC8
B
206 213Right-handed 310
Helix 27
AC9
B
236 245Right-handed alpha
Helix 28
AD1
B
249 254Right-handed alpha
Helix 29
AD2
B
255 261Right-handed alpha
Helix 30
AD3
B
271 284Right-handed alpha
Helix 31
AD4
B
295 303Right-handed alpha
Helix 32
AD5
B
373 386Right-handed alpha
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There are 8 sheets in PDB entry 5GMX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
43 51anti-parallel
Strand 3
A
33 40anti-parallel
Strand 4
A
357 363anti-parallel
Strand 5
A
348 352anti-parallel
Strand 6
A
339 342anti-parallel
Strand 7
A
325 326anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
269 270anti-parallel
Strand 3
A
201 202anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 288first strand
Strand 2
A
291 292anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 310first strand
Strand 2
A
317 320anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 11first strand
Strand 2
B
43 51anti-parallel
Strand 3
B
33 40anti-parallel
Strand 4
B
357 363anti-parallel
Strand 5
B
348 352anti-parallel
Strand 6
B
339 342anti-parallel
Strand 7
B
325 326anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 68first strand
Strand 2
B
269 270anti-parallel
Strand 3
B
201 202anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 288first strand
Strand 2
B
291 292anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 310first strand
Strand 2
B
317 320anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il