Analysis of interatomic Contacts of Structural Units in PDB entry:
5GMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GMY entry

There are 2 chains in PDB entry 5GMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5LEU 868
B
 ARG 1CYS 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 5GMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 29Right-handed alpha
Helix 2
AA2
A
32 37Right-handed alpha
Helix 3
AA3
A
46 61Right-handed alpha
Helix 4
AA4
A
83 97Right-handed alpha
Helix 5
AA5
A
101 120Right-handed alpha
Helix 6
AA6
A
120 132Right-handed alpha
Helix 7
AA7
A
133 144Right-handed alpha
Helix 8
AA8
A
149 154Right-handed alpha
Helix 9
AA9
A
162 183Right-handed alpha
Helix 10
AB1
A
198 213Right-handed alpha
Helix 11
AB2
A
215 219Right-handed 310
Helix 12
AB3
A
220 235Right-handed alpha
Helix 13
AB4
A
242 262Right-handed alpha
Helix 14
AB5
A
263 265Right-handed 310
Helix 15
AB6
A
277 303Right-handed alpha
Helix 16
AB7
A
312 314Right-handed 310
Helix 17
AB8
A
315 327Right-handed alpha
Helix 18
AB9
A
352 357Right-handed 310
Helix 19
AC1
A
374 382Right-handed alpha
Helix 20
AC2
A
383 403Right-handed alpha
Helix 21
AC3
A
404 424Right-handed alpha
Helix 22
AC4
A
427 450Right-handed alpha
Helix 23
AC5
A
451 459Right-handed alpha
Helix 24
AC6
A
467 493Right-handed alpha
Helix 25
AC7
A
500 514Right-handed alpha
Helix 26
AC8
A
516 524Right-handed alpha
Helix 27
AC9
A
550 552Right-handed 310
Helix 28
AD1
A
553 560Right-handed alpha
Helix 29
AD2
A
583 589Right-handed alpha
Helix 30
AD3
A
592 603Right-handed alpha
Helix 31
AD4
A
612 616Right-handed alpha
Helix 32
AD5
A
618 628Right-handed alpha
Helix 33
AD6
A
630 637Right-handed 310
Helix 34
AD7
A
673 676Right-handed 310
Helix 35
AD8
A
677 684Right-handed alpha
Helix 36
AD9
A
702 707Right-handed alpha
Helix 37
AE1
A
708 711Right-handed 310
Helix 38
AE2
A
719 733Right-handed alpha
Helix 39
AE3
A
739 755Right-handed alpha
Helix 40
AE4
A
854 860Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5GMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
78 79anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
546 548first strand
Strand 2
A
605 611parallel
Strand 3
A
771 776anti-parallel
Strand 4
A
693 698anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
649 652first strand
Strand 2
A
640 643anti-parallel
Strand 3
A
663 664anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
819 824first strand
Strand 2
A
780 785anti-parallel
Strand 3
A
863 865parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
806 814first strand
Strand 2
A
792 800anti-parallel
Strand 3
A
835 836anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
806 814first strand
Strand 2
A
792 800anti-parallel
Strand 3
A
840 844anti-parallel
Strand 4
A
847 851anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il