Analysis of interatomic Contacts of Structural Units in PDB entry:
5GN0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GN0 entry

There are 8 chains in PDB entry 5GN0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 204	VAL 425
B	LEU 204	VAL 425
C	LEU 204	VAL 425
D	ASN 205	VAL 425
E	THR 26	ASP 57
F	LEU 28	ASP 57
G	ASP 25	ASP 57
H	THR 26	ASP 57

There are 35 helices in PDB entry 5GN0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	259	267	Right-handed 310
Helix 2	AA2	A	273	281	Right-handed alpha
Helix 3	AA3	A	282	284	Right-handed 310
Helix 4	AA4	A	360	372	Right-handed alpha
Helix 5	AA5	A	375	384	Right-handed alpha
Helix 6	AA6	B	206	211	Right-handed alpha
Helix 7	AA7	B	261	267	Right-handed 310
Helix 8	AA8	B	273	281	Right-handed alpha
Helix 9	AA9	B	282	284	Right-handed 310
Helix 10	AB1	B	298	302	Right-handed 310
Helix 11	AB2	B	360	372	Right-handed alpha
Helix 12	AB3	B	375	383	Right-handed alpha
Helix 13	AB4	C	206	210	Right-handed 310
Helix 14	AB5	C	259	267	Right-handed 310
Helix 15	AB6	C	273	281	Right-handed alpha
Helix 16	AB7	C	282	284	Right-handed 310
Helix 17	AB8	C	298	303	Right-handed alpha
Helix 18	AB9	C	360	371	Right-handed alpha
Helix 19	AC1	C	375	383	Right-handed alpha
Helix 20	AC2	D	206	210	Right-handed 310
Helix 21	AC3	D	261	267	Right-handed 310
Helix 22	AC4	D	273	281	Right-handed alpha
Helix 23	AC5	D	282	284	Right-handed 310
Helix 24	AC6	D	298	302	Right-handed 310
Helix 25	AC7	D	360	371	Right-handed alpha
Helix 26	AC8	D	375	383	Right-handed alpha
Helix 27	AC9	E	28	32	Right-handed 310
Helix 28	AD1	E	42	46	Right-handed 310
Helix 29	AD2	E	49	53	Right-handed 310
Helix 30	AD3	F	49	54	Right-handed 310
Helix 31	AD4	G	28	33	Right-handed 310
Helix 32	AD5	G	49	53	Right-handed 310
Helix 33	AD6	H	30	34	Right-handed 310
Helix 34	AD7	H	42	46	Right-handed 310
Helix 35	AD8	H	49	54	Right-handed 310

There are 6 sheets in PDB entry 5GN0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	346	first strand
Strand 2	A	349	358	anti-parallel
Strand 3	A	306	315	anti-parallel
Strand 4	A	218	228	anti-parallel
Strand 5	A	234	243	anti-parallel
Strand 6	B	234	244	anti-parallel
Strand 7	B	218	229	anti-parallel
Strand 8	B	306	315	anti-parallel
Strand 9	B	349	358	anti-parallel
Strand 10	B	344	346	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	258	first strand
Strand 2	A	418	424	parallel
Strand 3	A	286	293	anti-parallel
Strand 4	A	400	410	parallel
Strand 5	A	386	394	anti-parallel
Strand 6	A	320	329	anti-parallel
Strand 7	A	332	342	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	259	first strand
Strand 2	B	418	425	parallel
Strand 3	B	286	292	anti-parallel
Strand 4	B	400	407	parallel
Strand 5	B	386	394	anti-parallel
Strand 6	B	321	329	anti-parallel
Strand 7	B	332	341	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	346	first strand
Strand 2	C	349	358	anti-parallel
Strand 3	C	306	315	anti-parallel
Strand 4	C	218	229	anti-parallel
Strand 5	C	234	244	anti-parallel
Strand 6	D	234	244	anti-parallel
Strand 7	D	218	228	anti-parallel
Strand 8	D	306	315	anti-parallel
Strand 9	D	349	358	anti-parallel
Strand 10	D	344	346	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	258	first strand
Strand 2	C	418	424	parallel
Strand 3	C	286	293	anti-parallel
Strand 4	C	400	410	parallel
Strand 5	C	386	394	anti-parallel
Strand 6	C	321	329	anti-parallel
Strand 7	C	332	341	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	259	first strand
Strand 2	D	418	425	parallel
Strand 3	D	286	293	anti-parallel
Strand 4	D	400	410	parallel
Strand 5	D	386	394	anti-parallel
Strand 6	D	320	329	anti-parallel
Strand 7	D	332	342	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GN0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GN0