Analysis of interatomic Contacts of Structural Units in PDB entry:
5GN1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GN1 entry

There are 4 chains in PDB entry 5GN1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 810GLU 1124
B
 HIS 809LEU 1123
C
 HIS 809HIS 1127
D
 LEU 810HIS 1129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 5GN1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
823 847Right-handed alpha
Helix 2
AA2
A
852 859Right-handed alpha
Helix 3
AA3
A
860 862Right-handed 310
Helix 4
AA4
A
863 875Right-handed alpha
Helix 5
AA5
A
877 881Right-handed 310
Helix 6
AA6
A
886 898Right-handed alpha
Helix 7
AA7
A
900 905Right-handed alpha
Helix 8
AA8
A
908 918Right-handed alpha
Helix 9
AA9
A
920 931Right-handed alpha
Helix 10
AB1
A
931 936Right-handed alpha
Helix 11
AB2
A
937 939Right-handed 310
Helix 12
AB3
A
943 947Right-handed 310
Helix 13
AB4
A
948 963Right-handed alpha
Helix 14
AB5
A
975 989Right-handed alpha
Helix 15
AB6
A
1004 1015Right-handed alpha
Helix 16
AB7
A
1026 1030Right-handed 310
Helix 17
AB8
A
1048 1057Right-handed alpha
Helix 18
AB9
A
1078 1087Right-handed alpha
Helix 19
AC1
A
1093 1097Right-handed 310
Helix 20
AC2
A
1108 1124Right-handed alpha
Helix 21
AC3
B
823 847Right-handed alpha
Helix 22
AC4
B
852 861Right-handed alpha
Helix 23
AC5
B
863 875Right-handed alpha
Helix 24
AC6
B
877 881Right-handed 310
Helix 25
AC7
B
886 897Right-handed alpha
Helix 26
AC8
B
900 905Right-handed alpha
Helix 27
AC9
B
908 918Right-handed alpha
Helix 28
AD1
B
920 931Right-handed alpha
Helix 29
AD2
B
931 936Right-handed alpha
Helix 30
AD3
B
937 939Right-handed 310
Helix 31
AD4
B
943 947Right-handed 310
Helix 32
AD5
B
948 963Right-handed alpha
Helix 33
AD6
B
975 990Right-handed alpha
Helix 34
AD7
B
1001 1015Right-handed alpha
Helix 35
AD8
B
1026 1030Right-handed 310
Helix 36
AD9
B
1048 1057Right-handed alpha
Helix 37
AE1
B
1078 1087Right-handed alpha
Helix 38
AE2
B
1108 1123Right-handed alpha
Helix 39
AE3
C
823 847Right-handed alpha
Helix 40
AE4
C
852 858Right-handed alpha
Helix 41
AE5
C
859 862Right-handed 310
Helix 42
AE6
C
863 875Right-handed alpha
Helix 43
AE7
C
877 881Right-handed 310
Helix 44
AE8
C
886 898Right-handed alpha
Helix 45
AE9
C
900 905Right-handed alpha
Helix 46
AF1
C
908 918Right-handed alpha
Helix 47
AF2
C
920 931Right-handed alpha
Helix 48
AF3
C
931 936Right-handed alpha
Helix 49
AF4
C
937 939Right-handed 310
Helix 50
AF5
C
943 947Right-handed 310
Helix 51
AF6
C
948 963Right-handed alpha
Helix 52
AF7
C
975 989Right-handed alpha
Helix 53
AF8
C
1001 1015Right-handed alpha
Helix 54
AF9
C
1026 1030Right-handed 310
Helix 55
AG1
C
1048 1057Right-handed alpha
Helix 56
AG2
C
1078 1087Right-handed alpha
Helix 57
AG3
C
1108 1124Right-handed alpha
Helix 58
AG4
D
823 846Right-handed alpha
Helix 59
AG5
D
852 859Right-handed alpha
Helix 60
AG6
D
860 862Right-handed 310
Helix 61
AG7
D
863 875Right-handed alpha
Helix 62
AG8
D
877 881Right-handed 310
Helix 63
AG9
D
886 897Right-handed alpha
Helix 64
AH1
D
900 905Right-handed alpha
Helix 65
AH2
D
908 918Right-handed alpha
Helix 66
AH3
D
920 931Right-handed alpha
Helix 67
AH4
D
931 936Right-handed alpha
Helix 68
AH5
D
937 939Right-handed 310
Helix 69
AH6
D
943 947Right-handed 310
Helix 70
AH7
D
948 963Right-handed alpha
Helix 71
AH8
D
975 989Right-handed alpha
Helix 72
AH9
D
1001 1003Right-handed 310
Helix 73
AI1
D
1004 1015Right-handed alpha
Helix 74
AI2
D
1026 1030Right-handed 310
Helix 75
AI3
D
1048 1057Right-handed alpha
Helix 76
AI4
D
1078 1087Right-handed alpha
Helix 77
AI5
D
1092 1096Right-handed 310
Helix 78
AI6
D
1108 1124Right-handed alpha
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There are 4 sheets in PDB entry 5GN1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
813 820first strand
Strand 2
A
1068 1075parallel
Strand 3
A
1039 1042parallel
Strand 4
A
969 973parallel
Strand 5
A
1020 1024parallel
Strand 6
A
993 996parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
813 820first strand
Strand 2
B
1068 1075parallel
Strand 3
B
1039 1042parallel
Strand 4
B
969 973parallel
Strand 5
B
1020 1024parallel
Strand 6
B
993 996parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
813 820first strand
Strand 2
C
1068 1075parallel
Strand 3
C
1039 1042parallel
Strand 4
C
969 973parallel
Strand 5
C
1020 1024parallel
Strand 6
C
993 996parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
813 820first strand
Strand 2
D
1068 1075parallel
Strand 3
D
1039 1042parallel
Strand 4
D
969 973parallel
Strand 5
D
1020 1024parallel
Strand 6
D
993 996parallel
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