Analysis of interatomic Contacts of Structural Units in PDB entry:
5GN2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GN2 entry

There are 4 chains in PDB entry 5GN2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 272
B
 MET 1PRO 272
C
 MET 1PRO 272
D
 MET 1PRO 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 57 helices in PDB entry 5GN2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 20Right-handed alpha
Helix 2
AA2
A
33 37Right-handed 310
Helix 3
AA3
A
59 66Right-handed alpha
Helix 4
AA4
A
71 83Right-handed alpha
Helix 5
AA5
A
105 110Right-handed 310
Helix 6
AA6
A
112 128Right-handed alpha
Helix 7
AA7
A
139 151Right-handed alpha
Helix 8
AA8
A
155 159Right-handed 310
Helix 9
AA9
A
170 176Right-handed alpha
Helix 10
AB1
A
178 201Right-handed alpha
Helix 11
AB2
A
202 204Right-handed 310
Helix 12
AB3
A
221 225Right-handed 310
Helix 13
AB4
A
229 233Right-handed 310
Helix 14
AB5
A
238 243Right-handed 310
Helix 15
AB6
A
254 260Right-handed alpha
Helix 16
AB7
B
13 20Right-handed alpha
Helix 17
AB8
B
33 37Right-handed 310
Helix 18
AB9
B
59 66Right-handed alpha
Helix 19
AC1
B
71 83Right-handed alpha
Helix 20
AC2
B
105 110Right-handed 310
Helix 21
AC3
B
112 128Right-handed alpha
Helix 22
AC4
B
139 151Right-handed alpha
Helix 23
AC5
B
155 159Right-handed 310
Helix 24
AC6
B
170 176Right-handed alpha
Helix 25
AC7
B
178 201Right-handed alpha
Helix 26
AC8
B
202 204Right-handed 310
Helix 27
AC9
B
221 225Right-handed 310
Helix 28
AD1
B
229 233Right-handed 310
Helix 29
AD2
B
238 243Right-handed 310
Helix 30
AD3
B
254 260Right-handed alpha
Helix 31
AD4
C
13 20Right-handed alpha
Helix 32
AD5
C
33 37Right-handed 310
Helix 33
AD6
C
59 66Right-handed alpha
Helix 34
AD7
C
71 83Right-handed alpha
Helix 35
AD8
C
112 128Right-handed alpha
Helix 36
AD9
C
139 151Right-handed alpha
Helix 37
AE1
C
155 159Right-handed 310
Helix 38
AE2
C
170 176Right-handed alpha
Helix 39
AE3
C
178 201Right-handed alpha
Helix 40
AE4
C
202 204Right-handed 310
Helix 41
AE5
C
229 233Right-handed 310
Helix 42
AE6
C
238 243Right-handed 310
Helix 43
AE7
C
254 260Right-handed alpha
Helix 44
AE8
D
13 20Right-handed alpha
Helix 45
AE9
D
33 37Right-handed 310
Helix 46
AF1
D
59 66Right-handed alpha
Helix 47
AF2
D
71 83Right-handed alpha
Helix 48
AF3
D
105 110Right-handed 310
Helix 49
AF4
D
112 128Right-handed alpha
Helix 50
AF5
D
139 151Right-handed alpha
Helix 51
AF6
D
155 159Right-handed 310
Helix 52
AF7
D
170 176Right-handed alpha
Helix 53
AF8
D
178 201Right-handed alpha
Helix 54
AF9
D
221 225Right-handed 310
Helix 55
AG1
D
229 233Right-handed 310
Helix 56
AG2
D
238 243Right-handed 310
Helix 57
AG3
D
254 260Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5GN2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
90 94anti-parallel
Strand 3
A
51 55parallel
Strand 4
A
134 138parallel
Strand 5
A
163 166parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
261 265anti-parallel
Strand 3
B
261 265anti-parallel
Strand 4
B
248 249anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 43first strand
Strand 2
B
90 94anti-parallel
Strand 3
B
51 55parallel
Strand 4
B
134 138parallel
Strand 5
B
162 166parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 43first strand
Strand 2
C
90 94anti-parallel
Strand 3
C
51 55parallel
Strand 4
C
134 137parallel
Strand 5
C
162 165parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
248 249first strand
Strand 2
C
261 265anti-parallel
Strand 3
D
261 265anti-parallel
Strand 4
D
248 250anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
41 43first strand
Strand 2
D
90 94anti-parallel
Strand 3
D
51 55parallel
Strand 4
D
134 138parallel
Strand 5
D
163 166parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il