Analysis of interatomic Contacts of Structural Units in PDB entry:
5GN5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GN5 entry

There are 3 chains in PDB entry 5GN5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA -1	LYS 511
B	ALA -1	LYS 511
C	ALA -1	PHE 265

There are 73 helices in PDB entry 5GN5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	67	Right-handed alpha
Helix 2	AA2	A	109	121	Right-handed alpha
Helix 3	AA3	A	128	133	Right-handed alpha
Helix 4	AA4	A	140	152	Right-handed alpha
Helix 5	AA5	A	152	161	Right-handed alpha
Helix 6	AA6	A	169	178	Right-handed alpha
Helix 7	AA7	A	187	191	Right-handed alpha
Helix 8	AA8	A	204	212	Right-handed alpha
Helix 9	AA9	A	237	243	Right-handed alpha
Helix 10	AB1	A	254	262	Right-handed alpha
Helix 11	AB2	A	320	330	Right-handed alpha
Helix 12	AB3	A	338	346	Right-handed alpha
Helix 13	AB4	A	383	411	Right-handed alpha
Helix 14	AB5	A	421	425	Right-handed 310
Helix 15	AB6	A	426	438	Right-handed alpha
Helix 16	AB7	A	448	462	Right-handed alpha
Helix 17	AB8	A	467	479	Right-handed alpha
Helix 18	AB9	A	489	505	Right-handed alpha
Helix 19	AC1	B	46	69	Right-handed alpha
Helix 20	AC2	B	109	119	Right-handed alpha
Helix 21	AC3	B	140	152	Right-handed alpha
Helix 22	AC4	B	152	161	Right-handed alpha
Helix 23	AC5	B	169	179	Right-handed alpha
Helix 24	AC6	B	187	191	Right-handed alpha
Helix 25	AC7	B	204	211	Right-handed alpha
Helix 26	AC8	B	214	218	Right-handed 310
Helix 27	AC9	B	237	243	Right-handed alpha
Helix 28	AD1	B	254	262	Right-handed alpha
Helix 29	AD2	B	320	330	Right-handed alpha
Helix 30	AD3	B	336	346	Right-handed alpha
Helix 31	AD4	B	383	411	Right-handed alpha
Helix 32	AD5	B	423	425	Right-handed 310
Helix 33	AD6	B	426	438	Right-handed alpha
Helix 34	AD7	B	448	462	Right-handed alpha
Helix 35	AD8	B	467	478	Right-handed alpha
Helix 36	AD9	B	489	507	Right-handed alpha
Helix 37	AE1	C	46	67	Right-handed alpha
Helix 38	AE2	C	109	122	Right-handed alpha
Helix 39	AE3	C	140	152	Right-handed alpha
Helix 40	AE4	C	152	162	Right-handed alpha
Helix 41	AE5	C	169	178	Right-handed alpha
Helix 42	AE6	C	187	191	Right-handed alpha
Helix 43	AE7	C	204	212	Right-handed alpha
Helix 44	AE8	C	214	218	Right-handed 310
Helix 45	AE9	C	237	243	Right-handed alpha
Helix 46	AF1	C	254	262	Right-handed alpha
Helix 47	AF2	C	320	330	Right-handed alpha
Helix 48	AF3	C	337	346	Right-handed alpha
Helix 49	AF4	C	383	411	Right-handed alpha
Helix 50	AF5	C	421	425	Right-handed 310
Helix 51	AF6	C	426	438	Right-handed alpha
Helix 52	AF7	C	448	463	Right-handed alpha
Helix 53	AF8	C	467	479	Right-handed alpha
Helix 54	AF9	C	489	505	Right-handed alpha
Helix 55	AG1	D	46	67	Right-handed alpha
Helix 56	AG2	D	109	119	Right-handed alpha
Helix 57	AG3	D	126	131	Right-handed 310
Helix 58	AG4	D	140	152	Right-handed alpha
Helix 59	AG5	D	152	161	Right-handed alpha
Helix 60	AG6	D	169	179	Right-handed alpha
Helix 61	AG7	D	187	191	Right-handed alpha
Helix 62	AG8	D	204	211	Right-handed alpha
Helix 63	AG9	D	214	218	Right-handed 310
Helix 64	AH1	D	237	242	Right-handed alpha
Helix 65	AH2	D	254	262	Right-handed alpha
Helix 66	AH3	D	320	330	Right-handed alpha
Helix 67	AH4	D	338	347	Right-handed alpha
Helix 68	AH5	D	383	411	Right-handed alpha
Helix 69	AH6	D	421	425	Right-handed 310
Helix 70	AH7	D	426	438	Right-handed alpha
Helix 71	AH8	D	448	462	Right-handed alpha
Helix 72	AH9	D	467	479	Right-handed alpha
Helix 73	AI1	D	489	505	Right-handed alpha

There are 27 sheets in PDB entry 5GN5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	32	first strand
Strand 2	A	13	20	anti-parallel
Strand 3	A	3	9	anti-parallel
Strand 4	A	77	82	parallel
Strand 5	A	247	253	parallel
Strand 6	A	225	230	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	101	102	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	91	first strand
Strand 2	A	164	168	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	186	first strand
Strand 2	A	220	222	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	302	first strand
Strand 2	A	309	317	anti-parallel
Strand 3	A	278	285	anti-parallel
Strand 4	A	269	274	anti-parallel
Strand 5	A	416	420	parallel
Strand 6	A	441	444	parallel
Strand 7	A	481	484	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	373	378	anti-parallel
Strand 3	B	373	378	anti-parallel
Strand 4	B	354	356	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	32	first strand
Strand 2	B	13	20	anti-parallel
Strand 3	B	3	9	anti-parallel
Strand 4	B	78	82	parallel
Strand 5	B	247	253	parallel
Strand 6	B	229	230	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	101	102	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	99	first strand
Strand 2	B	87	91	anti-parallel
Strand 3	B	164	168	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	186	first strand
Strand 2	B	220	222	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	197	first strand
Strand 2	B	202	203	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	302	first strand
Strand 2	B	309	317	anti-parallel
Strand 3	B	278	285	anti-parallel
Strand 4	B	269	274	anti-parallel
Strand 5	B	417	421	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	444	first strand
Strand 2	B	481	484	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	32	first strand
Strand 2	C	13	20	anti-parallel
Strand 3	C	3	9	anti-parallel
Strand 4	C	75	82	parallel
Strand 5	C	247	253	parallel
Strand 6	C	225	230	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	45	first strand
Strand 2	C	101	102	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	91	first strand
Strand 2	C	164	168	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	186	first strand
Strand 2	C	220	222	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	197	first strand
Strand 2	C	202	203	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	302	first strand
Strand 2	C	309	317	anti-parallel
Strand 3	C	278	285	anti-parallel
Strand 4	C	270	274	anti-parallel
Strand 5	C	417	420	parallel
Strand 6	C	441	444	parallel
Strand 7	C	481	484	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	356	first strand
Strand 2	C	373	378	anti-parallel
Strand 3	D	373	378	anti-parallel
Strand 4	D	354	356	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	32	first strand
Strand 2	D	13	20	anti-parallel
Strand 3	D	3	9	anti-parallel
Strand 4	D	78	82	parallel
Strand 5	D	252	253	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	101	102	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	91	first strand
Strand 2	D	164	168	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	186	first strand
Strand 2	D	220	222	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	197	first strand
Strand 2	D	202	203	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	230	first strand
Strand 2	D	247	250	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	296	302	first strand
Strand 2	D	309	317	anti-parallel
Strand 3	D	278	285	anti-parallel
Strand 4	D	270	273	anti-parallel
Strand 5	D	416	420	parallel
Strand 6	D	440	444	parallel
Strand 7	D	481	484	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GN5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GN5