Analysis of interatomic Contacts of Structural Units in PDB entry:
5GNB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GNB entry

There is 1 chain in PDB entry 5GNB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 311CYS 674
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5GNB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
328 334Right-handed alpha
Helix 2
AA2
A
341 344Right-handed 310
Helix 3
AA3
A
355 363Right-handed alpha
Helix 4
AA4
A
374 378Right-handed 310
Helix 5
AA5
A
394 402Right-handed 310
Helix 6
AA6
A
407 413Right-handed alpha
Helix 7
AA7
A
432 434Right-handed 310
Helix 8
AA8
A
442 448Right-handed alpha
Helix 9
AA9
A
478 483Right-handed alpha
Helix 10
AB1
A
529 533Right-handed 310
Helix 11
AB2
A
552 556Right-handed 310
Helix 12
AB3
A
570 574Right-handed 310
Helix 13
AB4
A
639 643Right-handed 310
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There are 8 sheets in PDB entry 5GNB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
621 626parallel
Strand 3
A
629 638anti-parallel
Strand 4
A
668 672anti-parallel
Strand 5
A
657 661anti-parallel
Strand 6
A
649 651anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
435 437parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 349first strand
Strand 2
A
385 392anti-parallel
Strand 3
A
587 597anti-parallel
Strand 4
A
422 430anti-parallel
Strand 5
A
364 371anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 349first strand
Strand 2
A
385 392anti-parallel
Strand 3
A
587 597anti-parallel
Strand 4
A
583 584anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 354first strand
Strand 2
A
604 606parallel
Strand 3
A
382 383anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 463first strand
Strand 2
A
577 581anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 468first strand
Strand 2
A
536 537anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 509first strand
Strand 2
A
512 518anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il