Analysis of interatomic Contacts of Structural Units in PDB entry:
5GNE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GNE entry

There are 2 chains in PDB entry 5GNE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 28ASN 397
B
 GLU 28ASN 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5GNE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 43Right-handed alpha
Helix 2
AA2
A
44 46Right-handed 310
Helix 3
AA3
A
63 78Right-handed alpha
Helix 4
AA4
A
83 88Right-handed alpha
Helix 5
AA5
A
91 95Right-handed 310
Helix 6
AA6
A
96 104Right-handed alpha
Helix 7
AA7
A
120 129Right-handed alpha
Helix 8
AA8
A
132 146Right-handed alpha
Helix 9
AA9
A
153 174Right-handed alpha
Helix 10
AB1
A
227 244Right-handed alpha
Helix 11
AB2
A
264 277Right-handed alpha
Helix 12
AB3
A
309 323Right-handed alpha
Helix 13
AB4
A
339 346Right-handed alpha
Helix 14
AB5
A
371 375Right-handed 310
Helix 15
AB6
A
376 396Right-handed alpha
Helix 16
AB7
B
36 43Right-handed alpha
Helix 17
AB8
B
44 46Right-handed 310
Helix 18
AB9
B
63 73Right-handed alpha
Helix 19
AC1
B
73 78Right-handed alpha
Helix 20
AC2
B
83 88Right-handed alpha
Helix 21
AC3
B
91 95Right-handed 310
Helix 22
AC4
B
96 104Right-handed alpha
Helix 23
AC5
B
120 129Right-handed alpha
Helix 24
AC6
B
132 144Right-handed alpha
Helix 25
AC7
B
153 174Right-handed alpha
Helix 26
AC8
B
227 245Right-handed alpha
Helix 27
AC9
B
264 277Right-handed alpha
Helix 28
AD1
B
309 323Right-handed alpha
Helix 29
AD2
B
339 346Right-handed alpha
Helix 30
AD3
B
371 375Right-handed 310
Helix 31
AD4
B
376 396Right-handed alpha
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There are 6 sheets in PDB entry 5GNE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 51first strand
Strand 2
A
55 60anti-parallel
Strand 3
A
30 35anti-parallel
Strand 4
A
81 82anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 186first strand
Strand 2
A
190 199anti-parallel
Strand 3
A
252 257anti-parallel
Strand 4
A
207 213parallel
Strand 5
A
281 286parallel
Strand 6
A
350 351parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 331first strand
Strand 2
A
301 304parallel
Strand 3
A
353 354anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 51first strand
Strand 2
B
55 60anti-parallel
Strand 3
B
30 35anti-parallel
Strand 4
B
81 82anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 186first strand
Strand 2
B
190 199anti-parallel
Strand 3
B
252 257anti-parallel
Strand 4
B
207 213parallel
Strand 5
B
281 286parallel
Strand 6
B
350 351parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 331first strand
Strand 2
B
301 304parallel
Strand 3
B
353 354anti-parallel
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