Analysis of interatomic Contacts of Structural Units in PDB entry:
5GNJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GNJ entry

There are 16 chains in PDB entry 5GNJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
G
 ASN 452GLY 524
I
 GLU 449ALA 523
K
 A 603 C 616
L
 G 804 C 817
A
 ASN 452ARG 525
B
 GLU 449ARG 525
C
 A 603 C 616
D
 G 804 C 817
E
 ASN 452ARG 525
F
 ASN 452GLY 524
H
 A 603 C 616
J
 G 805 C 817
M
 ASN 452GLY 524
N
 ASN 452GLY 524
O
 G 604 C 616
P
 G 805 C 816
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5GNJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
G
453 473Right-handed alpha
Helix 2
AA2
G
482 523Right-handed alpha
Helix 3
AA3
I
450 473Right-handed alpha
Helix 4
AA4
I
482 522Right-handed alpha
Helix 5
AA5
A
453 475Right-handed alpha
Helix 6
AA6
A
482 525Right-handed alpha
Helix 7
AA7
B
450 473Right-handed alpha
Helix 8
AA8
B
482 522Right-handed alpha
Helix 9
AA9
E
453 475Right-handed alpha
Helix 10
AB1
E
482 523Right-handed alpha
Helix 11
AB2
F
453 475Right-handed alpha
Helix 12
AB3
F
482 523Right-handed alpha
Helix 13
AB4
M
453 472Right-handed alpha
Helix 14
AB5
M
482 523Right-handed alpha
Helix 15
AB6
N
453 475Right-handed alpha
Helix 16
AB7
N
482 523Right-handed alpha
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There are no sheets in PDB entry 5GNJ
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il