Analysis of interatomic Contacts of Structural Units in PDB entry:
5GNL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GNL entry

There is 1 chain in PDB entry 5GNL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 9ALA 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 5GNL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 19Right-handed 310
Helix 2
AA2
A
22 33Right-handed alpha
Helix 3
AA3
A
50 59Right-handed alpha
Helix 4
AA4
A
66 71Right-handed 310
Helix 5
AA5
A
72 76Right-handed 310
Helix 6
AA6
A
86 90Right-handed 310
Helix 7
AA7
A
93 104Right-handed alpha
Helix 8
AA8
A
107 114Right-handed alpha
Helix 9
AA9
A
114 128Right-handed alpha
Helix 10
AB1
A
137 141Right-handed alpha
Helix 11
AB2
A
143 155Right-handed alpha
Helix 12
AB3
A
157 159Right-handed 310
Helix 13
AB4
A
160 172Right-handed alpha
Helix 14
AB5
A
179 201Right-handed alpha
Helix 15
AB6
A
205 213Right-handed alpha
Helix 16
AB7
A
222 238Right-handed alpha
Helix 17
AB8
A
238 254Right-handed alpha
Helix 18
AB9
A
255 265Right-handed alpha
Helix 19
AC1
A
268 280Right-handed alpha
Helix 20
AC2
A
311 316Right-handed alpha
Helix 21
AC3
A
349 368Right-handed alpha
Helix 22
AC4
A
376 380Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 5GNL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
45 48anti-parallel
Strand 3
A
307 310parallel
Strand 4
A
289 291anti-parallel
Strand 5
A
63 64anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
372 373anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 297first strand
Strand 2
A
300 302anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il