Analysis of interatomic Contacts of Structural Units in PDB entry:
5GNT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GNT entry

There is 1 chain in PDB entry 5GNT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4SER 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5GNT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 42Right-handed alpha
Helix 2
AA2
A
50 72Right-handed alpha
Helix 3
AA3
A
87 96Right-handed alpha
Helix 4
AA4
A
137 143Right-handed alpha
Helix 5
AA5
A
167 172Right-handed alpha
Helix 6
AA6
A
192 197Right-handed alpha
Helix 7
AA7
A
213 227Right-handed alpha
Helix 8
AA8
A
245 266Right-handed alpha
Helix 9
AA9
A
274 278Right-handed 310
Helix 10
AB1
A
284 294Right-handed alpha
Helix 11
AB2
A
309 363Right-handed alpha
Helix 12
AB3
A
380 414Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5GNT.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
124 126anti-parallel
Strand 3
A
157 163anti-parallel
Strand 4
A
112 118parallel
Strand 5
A
174 178anti-parallel
Strand 6
A
76 81parallel
Strand 7
A
201 207parallel
Strand 8
A
231 237parallel
Strand 9
A
280 282parallel
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