Analysis of interatomic Contacts of Structural Units in PDB entry:
5GNW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GNW entry

There are 8 chains in PDB entry 5GNW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MSE 1	PRO 272
D	MSE 1	PRO 272
E	MSE 1	PRO 272
F	MSE 1	PRO 272
A	MSE 1	PRO 272
B	MSE 1	PRO 272
G	MSE 1	PRO 272
H	MSE 1	PRO 272

There are114 helices in PDB entry 5GNW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	13	20	Right-handed alpha
Helix 2	AA2	C	33	37	Right-handed 310
Helix 3	AA3	C	59	64	Right-handed alpha
Helix 4	AA4	C	71	84	Right-handed alpha
Helix 5	AA5	C	114	128	Right-handed alpha
Helix 6	AA6	C	139	151	Right-handed alpha
Helix 7	AA7	C	155	159	Right-handed 310
Helix 8	AA8	C	170	176	Right-handed alpha
Helix 9	AA9	C	178	185	Right-handed alpha
Helix 10	AB1	C	186	201	Right-handed alpha
Helix 11	AB2	C	202	204	Right-handed 310
Helix 12	AB3	C	221	225	Right-handed 310
Helix 13	AB4	C	229	233	Right-handed 310
Helix 14	AB5	C	254	260	Right-handed alpha
Helix 15	AB6	D	13	20	Right-handed alpha
Helix 16	AB7	D	33	37	Right-handed 310
Helix 17	AB8	D	59	66	Right-handed alpha
Helix 18	AB9	D	71	84	Right-handed alpha
Helix 19	AC1	D	106	110	Right-handed 310
Helix 20	AC2	D	112	128	Right-handed alpha
Helix 21	AC3	D	139	151	Right-handed alpha
Helix 22	AC4	D	155	159	Right-handed 310
Helix 23	AC5	D	170	175	Right-handed alpha
Helix 24	AC6	D	178	201	Right-handed alpha
Helix 25	AC7	D	202	204	Right-handed 310
Helix 26	AC8	D	221	225	Right-handed 310
Helix 27	AC9	D	229	233	Right-handed 310
Helix 28	AD1	D	254	260	Right-handed alpha
Helix 29	AD2	E	13	19	Right-handed alpha
Helix 30	AD3	E	34	37	Right-handed 310
Helix 31	AD4	E	59	66	Right-handed alpha
Helix 32	AD5	E	71	84	Right-handed alpha
Helix 33	AD6	E	112	128	Right-handed alpha
Helix 34	AD7	E	139	151	Right-handed alpha
Helix 35	AD8	E	155	159	Right-handed 310
Helix 36	AD9	E	170	176	Right-handed alpha
Helix 37	AE1	E	178	201	Right-handed alpha
Helix 38	AE2	E	202	204	Right-handed 310
Helix 39	AE3	E	221	225	Right-handed 310
Helix 40	AE4	E	229	233	Right-handed 310
Helix 41	AE5	E	238	242	Right-handed 310
Helix 42	AE6	E	254	260	Right-handed alpha
Helix 43	AE7	F	13	20	Right-handed alpha
Helix 44	AE8	F	33	37	Right-handed 310
Helix 45	AE9	F	59	66	Right-handed alpha
Helix 46	AF1	F	71	84	Right-handed alpha
Helix 47	AF2	F	106	110	Right-handed 310
Helix 48	AF3	F	112	128	Right-handed alpha
Helix 49	AF4	F	139	151	Right-handed alpha
Helix 50	AF5	F	155	159	Right-handed 310
Helix 51	AF6	F	170	176	Right-handed alpha
Helix 52	AF7	F	180	201	Right-handed alpha
Helix 53	AF8	F	202	204	Right-handed 310
Helix 54	AF9	F	221	225	Right-handed 310
Helix 55	AG1	F	229	233	Right-handed 310
Helix 56	AG2	F	239	243	Right-handed 310
Helix 57	AG3	F	254	260	Right-handed alpha
Helix 58	AG4	A	13	20	Right-handed alpha
Helix 59	AG5	A	33	37	Right-handed 310
Helix 60	AG6	A	59	66	Right-handed alpha
Helix 61	AG7	A	71	84	Right-handed alpha
Helix 62	AG8	A	106	110	Right-handed 310
Helix 63	AG9	A	112	128	Right-handed alpha
Helix 64	AH1	A	139	151	Right-handed alpha
Helix 65	AH2	A	155	159	Right-handed 310
Helix 66	AH3	A	170	176	Right-handed alpha
Helix 67	AH4	A	178	201	Right-handed alpha
Helix 68	AH5	A	202	204	Right-handed 310
Helix 69	AH6	A	221	225	Right-handed 310
Helix 70	AH7	A	229	233	Right-handed 310
Helix 71	AH8	A	254	260	Right-handed alpha
Helix 72	AH9	B	13	20	Right-handed alpha
Helix 73	AI1	B	33	37	Right-handed 310
Helix 74	AI2	B	59	66	Right-handed alpha
Helix 75	AI3	B	71	84	Right-handed alpha
Helix 76	AI4	B	105	110	Right-handed 310
Helix 77	AI5	B	112	128	Right-handed alpha
Helix 78	AI6	B	139	151	Right-handed alpha
Helix 79	AI7	B	155	159	Right-handed 310
Helix 80	AI8	B	170	176	Right-handed alpha
Helix 81	AI9	B	178	201	Right-handed alpha
Helix 82	AJ1	B	221	225	Right-handed 310
Helix 83	AJ2	B	229	233	Right-handed 310
Helix 84	AJ3	B	238	243	Right-handed 310
Helix 85	AJ4	B	254	260	Right-handed alpha
Helix 86	AJ5	G	13	20	Right-handed alpha
Helix 87	AJ6	G	33	37	Right-handed 310
Helix 88	AJ7	G	59	66	Right-handed alpha
Helix 89	AJ8	G	71	84	Right-handed alpha
Helix 90	AJ9	G	105	109	Right-handed 310
Helix 91	AK1	G	112	128	Right-handed alpha
Helix 92	AK2	G	139	151	Right-handed alpha
Helix 93	AK3	G	155	159	Right-handed 310
Helix 94	AK4	G	170	176	Right-handed alpha
Helix 95	AK5	G	178	201	Right-handed alpha
Helix 96	AK6	G	202	204	Right-handed 310
Helix 97	AK7	G	221	225	Right-handed 310
Helix 98	AK8	G	229	233	Right-handed 310
Helix 99	AK9	G	254	259	Right-handed alpha
Helix 100	AL1	H	13	20	Right-handed alpha
Helix 101	AL2	H	33	37	Right-handed 310
Helix 102	AL3	H	59	66	Right-handed alpha
Helix 103	AL4	H	71	84	Right-handed alpha
Helix 104	AL5	H	105	110	Right-handed 310
Helix 105	AL6	H	112	128	Right-handed alpha
Helix 106	AL7	H	139	151	Right-handed alpha
Helix 107	AL8	H	155	159	Right-handed 310
Helix 108	AL9	H	170	176	Right-handed alpha
Helix 109	AM1	H	178	201	Right-handed alpha
Helix 110	AM2	H	202	204	Right-handed 310
Helix 111	AM3	H	221	225	Right-handed 310
Helix 112	AM4	H	229	233	Right-handed 310
Helix 113	AM5	H	239	243	Right-handed 310
Helix 114	AM6	H	254	260	Right-handed alpha

There are 13 sheets in PDB entry 5GNW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	C	90	94	anti-parallel
Strand 3	C	51	55	parallel
Strand 4	C	134	138	parallel
Strand 5	C	163	166	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	249	first strand
Strand 2	C	261	265	anti-parallel
Strand 3	D	261	265	anti-parallel
Strand 4	D	248	250	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	43	first strand
Strand 2	D	90	94	anti-parallel
Strand 3	D	51	55	parallel
Strand 4	D	134	138	parallel
Strand 5	D	165	166	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	99	100	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	43	first strand
Strand 2	E	91	94	anti-parallel
Strand 3	E	51	55	parallel
Strand 4	E	134	138	parallel
Strand 5	E	163	166	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	248	250	first strand
Strand 2	E	261	265	anti-parallel
Strand 3	F	261	265	anti-parallel
Strand 4	F	248	250	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	43	first strand
Strand 2	F	90	94	anti-parallel
Strand 3	F	51	55	parallel
Strand 4	F	134	138	parallel
Strand 5	F	163	166	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	A	90	94	anti-parallel
Strand 3	A	51	55	parallel
Strand 4	A	134	138	parallel
Strand 5	A	163	166	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	250	first strand
Strand 2	A	261	265	anti-parallel
Strand 3	B	261	265	anti-parallel
Strand 4	B	248	250	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	B	90	94	anti-parallel
Strand 3	B	51	55	parallel
Strand 4	B	134	138	parallel
Strand 5	B	163	166	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	G	90	94	anti-parallel
Strand 3	G	51	55	parallel
Strand 4	G	134	138	parallel
Strand 5	G	162	166	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	248	249	first strand
Strand 2	G	261	265	anti-parallel
Strand 3	H	261	265	anti-parallel
Strand 4	H	248	250	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	42	43	first strand
Strand 2	H	90	94	anti-parallel
Strand 3	H	51	55	parallel
Strand 4	H	134	138	parallel
Strand 5	H	162	166	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GNW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GNW