Analysis of interatomic Contacts of Structural Units in PDB entry:
5GNX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GNX entry

There are 2 chains in PDB entry 5GNX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5THR 455
B
 ARG 7THR 455
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 5GNX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 27Right-handed alpha
Helix 2
AA2
A
31 35Right-handed 310
Helix 3
AA3
A
38 45Right-handed alpha
Helix 4
AA4
A
50 54Right-handed 310
Helix 5
AA5
A
61 76Right-handed alpha
Helix 6
AA6
A
86 91Right-handed alpha
Helix 7
AA7
A
99 116Right-handed alpha
Helix 8
AA8
A
130 135Right-handed alpha
Helix 9
AA9
A
136 142Right-handed 310
Helix 10
AB1
A
143 159Right-handed alpha
Helix 11
AB2
A
171 180Right-handed alpha
Helix 12
AB3
A
191 217Right-handed alpha
Helix 13
AB4
A
236 252Right-handed alpha
Helix 14
AB5
A
254 259Right-handed alpha
Helix 15
AB6
A
265 272Right-handed alpha
Helix 16
AB7
A
273 275Right-handed 310
Helix 17
AB8
A
279 287Right-handed alpha
Helix 18
AB9
A
333 347Right-handed alpha
Helix 19
AC1
A
375 395Right-handed alpha
Helix 20
AC2
A
412 419Right-handed 310
Helix 21
AC3
A
436 448Right-handed alpha
Helix 22
AC4
A
450 455Right-handed 310
Helix 23
AC5
B
22 27Right-handed alpha
Helix 24
AC6
B
31 35Right-handed 310
Helix 25
AC7
B
38 45Right-handed alpha
Helix 26
AC8
B
50 54Right-handed 310
Helix 27
AC9
B
61 76Right-handed alpha
Helix 28
AD1
B
86 91Right-handed alpha
Helix 29
AD2
B
99 116Right-handed alpha
Helix 30
AD3
B
130 135Right-handed alpha
Helix 31
AD4
B
136 142Right-handed 310
Helix 32
AD5
B
143 159Right-handed alpha
Helix 33
AD6
B
171 180Right-handed alpha
Helix 34
AD7
B
191 217Right-handed alpha
Helix 35
AD8
B
236 252Right-handed alpha
Helix 36
AD9
B
254 259Right-handed alpha
Helix 37
AE1
B
265 272Right-handed alpha
Helix 38
AE2
B
273 275Right-handed 310
Helix 39
AE3
B
279 287Right-handed alpha
Helix 40
AE4
B
333 348Right-handed alpha
Helix 41
AE5
B
375 395Right-handed alpha
Helix 42
AE6
B
412 419Right-handed 310
Helix 43
AE7
B
436 448Right-handed alpha
Helix 44
AE8
B
450 454Right-handed 310
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There are 6 sheets in PDB entry 5GNX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
80 84parallel
Strand 3
A
119 125parallel
Strand 4
A
165 170parallel
Strand 5
A
220 226parallel
Strand 6
A
293 296parallel
Strand 7
A
353 358parallel
Strand 8
A
399 405parallel
Strand 9
A
16 20parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 305first strand
Strand 2
A
314 316anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 426first strand
Strand 2
A
433 435anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 20first strand
Strand 2
B
80 84parallel
Strand 3
B
119 125parallel
Strand 4
B
165 170parallel
Strand 5
B
220 226parallel
Strand 6
B
293 296parallel
Strand 7
B
353 358parallel
Strand 8
B
399 405parallel
Strand 9
B
16 20parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 305first strand
Strand 2
B
314 316anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
424 426first strand
Strand 2
B
433 435anti-parallel
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