Analysis of interatomic Contacts of Structural Units in PDB entry:
5GO4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GO4 entry

There is 1 chain in PDB entry 5GO4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4SER 736
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 5GO4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 42Right-handed alpha
Helix 2
AA2
A
50 72Right-handed alpha
Helix 3
AA3
A
83 86Right-handed 310
Helix 4
AA4
A
87 97Right-handed alpha
Helix 5
AA5
A
105 111Right-handed 310
Helix 6
AA6
A
138 149Right-handed alpha
Helix 7
AA7
A
165 167Right-handed 310
Helix 8
AA8
A
169 172Right-handed 310
Helix 9
AA9
A
190 196Right-handed alpha
Helix 10
AB1
A
213 227Right-handed alpha
Helix 11
AB2
A
248 266Right-handed alpha
Helix 12
AB3
A
272 277Right-handed alpha
Helix 13
AB4
A
284 297Right-handed alpha
Helix 14
AB5
A
300 304Right-handed 310
Helix 15
AB6
A
309 374Right-handed alpha
Helix 16
AB7
A
701 734Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 5GO4.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
123 127anti-parallel
Strand 3
A
157 163anti-parallel
Strand 4
A
112 118parallel
Strand 5
A
174 178anti-parallel
Strand 6
A
76 81parallel
Strand 7
A
201 207parallel
Strand 8
A
231 237parallel
Strand 9
A
280 283parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il