Analysis of interatomic Contacts of Structural Units in PDB entry:
5GO5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GO5 entry

There are 2 chains in PDB entry 5GO5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 74THR 197
A
 GLU 199ARG 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5GO5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
85 89Right-handed 310
Helix 2
AA2
A
101 106Right-handed alpha
Helix 3
AA3
A
139 143Right-handed 310
Helix 4
AA4
A
173 178Right-handed 310
Helix 5
AA5
A
181 185Right-handed 310
Helix 6
AA6
A
221 223Right-handed 310
Helix 7
AA7
A
225 229Right-handed 310
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There is 1 sheet (AA1) in PDB entry 5GO5.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 84first strand
Strand 2
A
94 98anti-parallel
Strand 3
A
109 111parallel
Strand 4
A
122 128anti-parallel
Strand 5
A
191 197parallel
Strand 6
A
207 219anti-parallel
Strand 7
A
156 169anti-parallel
Strand 8
A
148 152anti-parallel
Strand 9
A
79 84anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il