Analysis of interatomic Contacts of Structural Units in PDB entry:
5GOM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GOM entry

There are 2 chains in PDB entry 5GOM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3PRO 735
B
 VAL 5SER 736
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5GOM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 42Right-handed alpha
Helix 2
AA2
A
50 72Right-handed alpha
Helix 3
AA3
A
87 96Right-handed alpha
Helix 4
AA4
A
138 149Right-handed alpha
Helix 5
AA5
A
167 172Right-handed alpha
Helix 6
AA6
A
187 192Right-handed alpha
Helix 7
AA7
A
213 227Right-handed alpha
Helix 8
AA8
A
239 244Right-handed alpha
Helix 9
AA9
A
245 247Right-handed 310
Helix 10
AB1
A
248 267Right-handed alpha
Helix 11
AB2
A
272 277Right-handed alpha
Helix 12
AB3
A
284 296Right-handed alpha
Helix 13
AB4
A
309 369Right-handed alpha
Helix 14
AB5
A
698 734Right-handed alpha
Helix 15
AB6
B
8 42Right-handed alpha
Helix 16
AB7
B
50 72Right-handed alpha
Helix 17
AB8
B
87 97Right-handed alpha
Helix 18
AB9
B
104 109Right-handed alpha
Helix 19
AC1
B
138 149Right-handed alpha
Helix 20
AC2
B
167 172Right-handed alpha
Helix 21
AC3
B
192 197Right-handed alpha
Helix 22
AC4
B
213 226Right-handed alpha
Helix 23
AC5
B
239 244Right-handed alpha
Helix 24
AC6
B
245 247Right-handed 310
Helix 25
AC7
B
248 266Right-handed alpha
Helix 26
AC8
B
275 278Right-handed 310
Helix 27
AC9
B
284 297Right-handed alpha
Helix 28
AD1
B
309 369Right-handed alpha
Helix 29
AD2
B
698 734Right-handed alpha
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There are 2 sheets in PDB entry 5GOM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
124 126anti-parallel
Strand 3
A
157 163anti-parallel
Strand 4
A
112 118parallel
Strand 5
A
174 178anti-parallel
Strand 6
A
76 81parallel
Strand 7
A
201 207parallel
Strand 8
A
231 237parallel
Strand 9
A
280 282parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
124 126anti-parallel
Strand 3
B
158 163anti-parallel
Strand 4
B
113 118parallel
Strand 5
B
174 178anti-parallel
Strand 6
B
76 81parallel
Strand 7
B
201 207parallel
Strand 8
B
231 237parallel
Strand 9
B
280 282parallel
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