Analysis of interatomic Contacts of Structural Units in PDB entry:
5GOQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GOQ entry

There are 3 chains in PDB entry 5GOQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 14	SER 456
B	LEU 11	SER 456
C	LEU 11	SER 456

There are 66 helices in PDB entry 5GOQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	23	Right-handed alpha
Helix 2	AA2	A	52	66	Right-handed alpha
Helix 3	AA3	A	68	83	Right-handed alpha
Helix 4	AA4	A	121	125	Right-handed 310
Helix 5	AA5	A	127	146	Right-handed alpha
Helix 6	AA6	A	148	153	Right-handed alpha
Helix 7	AA7	A	153	168	Right-handed alpha
Helix 8	AA8	A	197	215	Right-handed alpha
Helix 9	AA9	A	218	243	Right-handed alpha
Helix 10	AB1	A	246	255	Right-handed alpha
Helix 11	AB2	A	272	276	Right-handed 310
Helix 12	AB3	A	277	284	Right-handed alpha
Helix 13	AB4	A	306	315	Right-handed alpha
Helix 14	AB5	A	319	333	Right-handed alpha
Helix 15	AB6	A	333	338	Right-handed alpha
Helix 16	AB7	A	351	360	Right-handed alpha
Helix 17	AB8	A	362	366	Right-handed 310
Helix 18	AB9	A	376	378	Right-handed 310
Helix 19	AC1	A	379	390	Right-handed alpha
Helix 20	AC2	A	392	408	Right-handed alpha
Helix 21	AC3	A	432	448	Right-handed alpha
Helix 22	AC4	A	449	456	Right-handed 310
Helix 23	AC5	B	14	23	Right-handed alpha
Helix 24	AC6	B	52	66	Right-handed alpha
Helix 25	AC7	B	68	83	Right-handed alpha
Helix 26	AC8	B	121	125	Right-handed 310
Helix 27	AC9	B	127	146	Right-handed alpha
Helix 28	AD1	B	148	153	Right-handed alpha
Helix 29	AD2	B	153	168	Right-handed alpha
Helix 30	AD3	B	197	215	Right-handed alpha
Helix 31	AD4	B	218	243	Right-handed alpha
Helix 32	AD5	B	246	256	Right-handed alpha
Helix 33	AD6	B	272	276	Right-handed 310
Helix 34	AD7	B	277	284	Right-handed alpha
Helix 35	AD8	B	306	315	Right-handed alpha
Helix 36	AD9	B	319	333	Right-handed alpha
Helix 37	AE1	B	333	338	Right-handed alpha
Helix 38	AE2	B	351	360	Right-handed alpha
Helix 39	AE3	B	362	366	Right-handed 310
Helix 40	AE4	B	376	378	Right-handed 310
Helix 41	AE5	B	379	390	Right-handed alpha
Helix 42	AE6	B	392	408	Right-handed alpha
Helix 43	AE7	B	432	448	Right-handed alpha
Helix 44	AE8	B	449	455	Right-handed 310
Helix 45	AE9	C	14	23	Right-handed alpha
Helix 46	AF1	C	52	66	Right-handed alpha
Helix 47	AF2	C	68	84	Right-handed alpha
Helix 48	AF3	C	121	125	Right-handed 310
Helix 49	AF4	C	127	146	Right-handed alpha
Helix 50	AF5	C	148	153	Right-handed alpha
Helix 51	AF6	C	153	168	Right-handed alpha
Helix 52	AF7	C	197	215	Right-handed alpha
Helix 53	AF8	C	220	243	Right-handed alpha
Helix 54	AF9	C	246	255	Right-handed alpha
Helix 55	AG1	C	272	276	Right-handed 310
Helix 56	AG2	C	277	284	Right-handed alpha
Helix 57	AG3	C	306	315	Right-handed alpha
Helix 58	AG4	C	319	333	Right-handed alpha
Helix 59	AG5	C	333	338	Right-handed alpha
Helix 60	AG6	C	351	360	Right-handed alpha
Helix 61	AG7	C	376	378	Right-handed 310
Helix 62	AG8	C	379	390	Right-handed alpha
Helix 63	AG9	C	392	405	Right-handed alpha
Helix 64	AH1	C	406	411	Right-handed alpha
Helix 65	AH2	C	432	448	Right-handed alpha
Helix 66	AH3	C	449	456	Right-handed 310

There are 18 sheets in PDB entry 5GOQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	27	first strand
Strand 2	A	30	34	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	101	107	anti-parallel
Strand 3	A	110	116	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	245	first strand
Strand 2	A	290	291	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	296	first strand
Strand 2	A	299	301	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	305	first strand
Strand 2	A	346	347	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	417	first strand
Strand 2	A	423	424	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	27	first strand
Strand 2	B	30	34	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	101	105	anti-parallel
Strand 3	B	112	116	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	245	first strand
Strand 2	B	290	291	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	296	first strand
Strand 2	B	299	301	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	305	first strand
Strand 2	B	346	347	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	417	first strand
Strand 2	B	423	424	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	27	first strand
Strand 2	C	30	34	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	101	106	anti-parallel
Strand 3	C	111	116	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	245	first strand
Strand 2	C	290	291	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	296	first strand
Strand 2	C	299	301	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	305	first strand
Strand 2	C	346	347	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	416	417	first strand
Strand 2	C	423	424	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GOQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GOQ