Analysis of interatomic Contacts of Structural Units in PDB entry:
5GOR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GOR entry

There are 6 chains in PDB entry 5GOR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 11	SER 467
B	ARG 12	LEU 468
C	ARG 12	LEU 468
D	ARG 12	CYS 466
E	ARG 12	LEU 468
F	ARG 12	LEU 468

There are130 helices in PDB entry 5GOR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	23	Right-handed alpha
Helix 2	AA2	A	52	66	Right-handed alpha
Helix 3	AA3	A	68	83	Right-handed alpha
Helix 4	AA4	A	121	125	Right-handed 310
Helix 5	AA5	A	127	146	Right-handed alpha
Helix 6	AA6	A	148	153	Right-handed alpha
Helix 7	AA7	A	153	168	Right-handed alpha
Helix 8	AA8	A	197	215	Right-handed alpha
Helix 9	AA9	A	220	243	Right-handed alpha
Helix 10	AB1	A	246	255	Right-handed alpha
Helix 11	AB2	A	272	276	Right-handed 310
Helix 12	AB3	A	278	284	Right-handed alpha
Helix 13	AB4	A	306	315	Right-handed alpha
Helix 14	AB5	A	319	333	Right-handed alpha
Helix 15	AB6	A	333	338	Right-handed alpha
Helix 16	AB7	A	351	360	Right-handed alpha
Helix 17	AB8	A	376	378	Right-handed 310
Helix 18	AB9	A	379	390	Right-handed alpha
Helix 19	AC1	A	392	405	Right-handed alpha
Helix 20	AC2	A	406	411	Right-handed alpha
Helix 21	AC3	A	432	448	Right-handed alpha
Helix 22	AC4	A	449	455	Right-handed 310
Helix 23	AC5	B	14	23	Right-handed alpha
Helix 24	AC6	B	52	66	Right-handed alpha
Helix 25	AC7	B	68	83	Right-handed alpha
Helix 26	AC8	B	121	125	Right-handed 310
Helix 27	AC9	B	127	146	Right-handed alpha
Helix 28	AD1	B	153	168	Right-handed alpha
Helix 29	AD2	B	197	215	Right-handed alpha
Helix 30	AD3	B	220	243	Right-handed alpha
Helix 31	AD4	B	246	255	Right-handed alpha
Helix 32	AD5	B	272	277	Right-handed 310
Helix 33	AD6	B	278	284	Right-handed alpha
Helix 34	AD7	B	306	315	Right-handed alpha
Helix 35	AD8	B	319	333	Right-handed alpha
Helix 36	AD9	B	333	338	Right-handed alpha
Helix 37	AE1	B	352	360	Right-handed alpha
Helix 38	AE2	B	376	378	Right-handed 310
Helix 39	AE3	B	379	390	Right-handed alpha
Helix 40	AE4	B	392	405	Right-handed alpha
Helix 41	AE5	B	432	448	Right-handed alpha
Helix 42	AE6	B	450	455	Right-handed 310
Helix 43	AE7	C	14	23	Right-handed alpha
Helix 44	AE8	C	52	66	Right-handed alpha
Helix 45	AE9	C	68	83	Right-handed alpha
Helix 46	AF1	C	121	125	Right-handed 310
Helix 47	AF2	C	127	146	Right-handed alpha
Helix 48	AF3	C	148	153	Right-handed alpha
Helix 49	AF4	C	153	168	Right-handed alpha
Helix 50	AF5	C	197	215	Right-handed alpha
Helix 51	AF6	C	220	243	Right-handed alpha
Helix 52	AF7	C	246	255	Right-handed alpha
Helix 53	AF8	C	272	276	Right-handed 310
Helix 54	AF9	C	277	284	Right-handed alpha
Helix 55	AG1	C	306	315	Right-handed alpha
Helix 56	AG2	C	319	333	Right-handed alpha
Helix 57	AG3	C	333	338	Right-handed alpha
Helix 58	AG4	C	351	360	Right-handed alpha
Helix 59	AG5	C	362	366	Right-handed 310
Helix 60	AG6	C	376	378	Right-handed 310
Helix 61	AG7	C	379	390	Right-handed alpha
Helix 62	AG8	C	392	405	Right-handed alpha
Helix 63	AG9	C	432	448	Right-handed alpha
Helix 64	AH1	C	449	455	Right-handed 310
Helix 65	AH2	D	14	23	Right-handed alpha
Helix 66	AH3	D	52	66	Right-handed alpha
Helix 67	AH4	D	68	82	Right-handed alpha
Helix 68	AH5	D	121	125	Right-handed 310
Helix 69	AH6	D	127	146	Right-handed alpha
Helix 70	AH7	D	153	168	Right-handed alpha
Helix 71	AH8	D	197	215	Right-handed alpha
Helix 72	AH9	D	220	243	Right-handed alpha
Helix 73	AI1	D	246	254	Right-handed alpha
Helix 74	AI2	D	272	276	Right-handed 310
Helix 75	AI3	D	278	284	Right-handed alpha
Helix 76	AI4	D	306	315	Right-handed alpha
Helix 77	AI5	D	319	333	Right-handed alpha
Helix 78	AI6	D	333	338	Right-handed alpha
Helix 79	AI7	D	351	360	Right-handed alpha
Helix 80	AI8	D	362	366	Right-handed 310
Helix 81	AI9	D	376	378	Right-handed 310
Helix 82	AJ1	D	379	391	Right-handed alpha
Helix 83	AJ2	D	392	411	Right-handed alpha
Helix 84	AJ3	D	432	448	Right-handed alpha
Helix 85	AJ4	D	449	455	Right-handed 310
Helix 86	AJ5	E	14	23	Right-handed alpha
Helix 87	AJ6	E	44	49	Right-handed 310
Helix 88	AJ7	E	52	66	Right-handed alpha
Helix 89	AJ8	E	68	83	Right-handed alpha
Helix 90	AJ9	E	121	125	Right-handed 310
Helix 91	AK1	E	127	146	Right-handed alpha
Helix 92	AK2	E	148	153	Right-handed alpha
Helix 93	AK3	E	153	168	Right-handed alpha
Helix 94	AK4	E	197	215	Right-handed alpha
Helix 95	AK5	E	220	243	Right-handed alpha
Helix 96	AK6	E	246	255	Right-handed alpha
Helix 97	AK7	E	272	276	Right-handed 310
Helix 98	AK8	E	278	284	Right-handed alpha
Helix 99	AK9	E	306	315	Right-handed alpha
Helix 100	AL1	E	319	333	Right-handed alpha
Helix 101	AL2	E	333	338	Right-handed alpha
Helix 102	AL3	E	351	360	Right-handed alpha
Helix 103	AL4	E	376	378	Right-handed 310
Helix 104	AL5	E	379	390	Right-handed alpha
Helix 105	AL6	E	392	407	Right-handed alpha
Helix 106	AL7	E	432	448	Right-handed alpha
Helix 107	AL8	E	449	455	Right-handed 310
Helix 108	AL9	F	14	23	Right-handed alpha
Helix 109	AM1	F	52	66	Right-handed alpha
Helix 110	AM2	F	68	83	Right-handed alpha
Helix 111	AM3	F	121	125	Right-handed 310
Helix 112	AM4	F	127	146	Right-handed alpha
Helix 113	AM5	F	148	153	Right-handed alpha
Helix 114	AM6	F	153	168	Right-handed alpha
Helix 115	AM7	F	197	215	Right-handed alpha
Helix 116	AM8	F	220	243	Right-handed alpha
Helix 117	AM9	F	246	255	Right-handed alpha
Helix 118	AN1	F	272	277	Right-handed 310
Helix 119	AN2	F	278	284	Right-handed alpha
Helix 120	AN3	F	306	315	Right-handed alpha
Helix 121	AN4	F	319	333	Right-handed alpha
Helix 122	AN5	F	333	338	Right-handed alpha
Helix 123	AN6	F	351	360	Right-handed alpha
Helix 124	AN7	F	362	366	Right-handed 310
Helix 125	AN8	F	376	378	Right-handed 310
Helix 126	AN9	F	379	390	Right-handed alpha
Helix 127	AO1	F	392	405	Right-handed alpha
Helix 128	AO2	F	406	411	Right-handed alpha
Helix 129	AO3	F	432	448	Right-handed alpha
Helix 130	AO4	F	449	455	Right-handed 310

There are 32 sheets in PDB entry 5GOR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	27	first strand
Strand 2	A	30	34	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	101	106	anti-parallel
Strand 3	A	111	116	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	245	first strand
Strand 2	A	290	291	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	296	first strand
Strand 2	A	299	301	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	305	first strand
Strand 2	A	346	347	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	417	first strand
Strand 2	A	423	424	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	27	first strand
Strand 2	B	30	34	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	101	106	anti-parallel
Strand 3	B	111	116	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	245	first strand
Strand 2	B	290	291	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	296	first strand
Strand 2	B	299	301	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	305	first strand
Strand 2	B	346	347	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	417	first strand
Strand 2	B	423	424	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	27	first strand
Strand 2	C	30	34	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	101	106	anti-parallel
Strand 3	C	111	116	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	245	first strand
Strand 2	C	290	291	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	296	first strand
Strand 2	C	299	301	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	305	first strand
Strand 2	C	346	347	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	416	417	first strand
Strand 2	C	423	424	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	D	30	34	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	D	101	106	anti-parallel
Strand 3	D	111	116	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	245	first strand
Strand 2	D	290	291	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	296	first strand
Strand 2	D	299	301	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	305	first strand
Strand 2	D	346	347	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	416	417	first strand
Strand 2	D	423	424	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	26	first strand
Strand 2	E	31	34	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	51	first strand
Strand 2	E	101	106	anti-parallel
Strand 3	E	111	116	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	244	245	first strand
Strand 2	E	290	296	anti-parallel
Strand 3	E	299	305	anti-parallel
Strand 4	E	346	347	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	416	417	first strand
Strand 2	E	423	424	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	26	first strand
Strand 2	F	31	34	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	51	first strand
Strand 2	F	101	106	anti-parallel
Strand 3	F	111	116	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	244	245	first strand
Strand 2	F	290	296	anti-parallel
Strand 3	F	299	305	anti-parallel
Strand 4	F	346	347	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	416	417	first strand
Strand 2	F	423	424	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GOR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GOR