Analysis of interatomic Contacts of Structural Units in PDB entry:
5GOV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GOV entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 5GOV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 23SER 88
B
 ALA 90ILE 344
A
 ASP 22SER 88
A
 ALA 90ILE 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5GOV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
53 61Right-handed 310
Helix 2
AA2
B
69 73Right-handed 310
Helix 3
AA3
B
88 97Right-handed alpha
Helix 4
AA4
B
109 113Right-handed 310
Helix 5
AA5
B
115 123Right-handed alpha
Helix 6
AA6
B
144 146Right-handed 310
Helix 7
AA7
B
169 175Right-handed 310
Helix 8
AA8
B
176 184Right-handed alpha
Helix 9
AA9
B
202 206Right-handed 310
Helix 10
AB1
B
208 212Right-handed 310
Helix 11
AB2
B
222 226Right-handed 310
Helix 12
AB3
B
227 255Right-handed alpha
Helix 13
AB4
B
276 278Right-handed 310
Helix 14
AB5
B
290 294Right-handed 310
Helix 15
AB6
B
304 307Right-handed 310
Helix 16
AB7
B
321 330Right-handed alpha
Helix 17
AB8
A
53 61Right-handed 310
Helix 18
AB9
A
69 73Right-handed 310
Helix 19
AC1
A
88 97Right-handed alpha
Helix 20
AC2
A
109 113Right-handed 310
Helix 21
AC3
A
115 123Right-handed alpha
Helix 22
AC4
A
144 146Right-handed 310
Helix 23
AC5
A
169 175Right-handed 310
Helix 24
AC6
A
176 184Right-handed alpha
Helix 25
AC7
A
202 206Right-handed 310
Helix 26
AC8
A
208 212Right-handed 310
Helix 27
AC9
A
222 226Right-handed 310
Helix 28
AD1
A
227 255Right-handed alpha
Helix 29
AD2
A
276 278Right-handed 310
Helix 30
AD3
A
290 294Right-handed 310
Helix 31
AD4
A
304 307Right-handed 310
Helix 32
AD5
A
321 330Right-handed alpha
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There are 8 sheets in PDB entry 5GOV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
332 333anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 78first strand
Strand 2
B
298 302anti-parallel
Strand 3
B
261 268anti-parallel
Strand 4
B
42 49parallel
Strand 5
B
189 194parallel
Strand 6
B
126 131parallel
Strand 7
B
148 150parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 83first strand
Strand 2
B
317 318parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 274first strand
Strand 2
B
280 281anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
332 333anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
298 302anti-parallel
Strand 3
A
261 268anti-parallel
Strand 4
A
42 49parallel
Strand 5
A
189 194parallel
Strand 6
A
126 131parallel
Strand 7
A
148 150parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
317 318parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 274first strand
Strand 2
A
280 281anti-parallel
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