Analysis of interatomic Contacts of Structural Units in PDB entry:
5GP0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GP0 entry

There are 4 chains in PDB entry 5GP0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ALA 6THR 142
F
 ALA 6HIS 143
I
 ALA 6GLY 144
A
 ALA 12HIS 149
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5GP0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
48 62Right-handed alpha
Helix 2
AA2
E
120 122Right-handed 310
Helix 3
AA3
E
127 136Right-handed alpha
Helix 4
AA4
F
48 62Right-handed alpha
Helix 5
AA5
F
127 136Right-handed alpha
Helix 6
AA6
I
48 62Right-handed alpha
Helix 7
AA7
I
120 122Right-handed 310
Helix 8
AA8
I
127 136Right-handed alpha
Helix 9
AA9
A
54 68Right-handed alpha
Helix 10
AB1
A
126 128Right-handed 310
Helix 11
AB2
A
133 142Right-handed alpha
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There are 8 sheets in PDB entry 5GP0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
36 37first strand
Strand 2
E
21 27anti-parallel
Strand 3
E
9 18anti-parallel
Strand 4
E
85 96parallel
Strand 5
E
65 78anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
40 42first strand
Strand 2
E
9 18anti-parallel
Strand 3
E
21 27anti-parallel
Strand 4
E
111 118anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
36 37first strand
Strand 2
F
21 27anti-parallel
Strand 3
F
9 18anti-parallel
Strand 4
F
85 96parallel
Strand 5
F
65 78anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
40 42first strand
Strand 2
F
9 18anti-parallel
Strand 3
F
21 27anti-parallel
Strand 4
F
111 118anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
36 37first strand
Strand 2
I
21 27anti-parallel
Strand 3
I
9 18anti-parallel
Strand 4
I
85 96parallel
Strand 5
I
65 78anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
40 42first strand
Strand 2
I
9 18anti-parallel
Strand 3
I
21 27anti-parallel
Strand 4
I
111 118anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
27 33anti-parallel
Strand 3
A
15 24anti-parallel
Strand 4
A
91 102parallel
Strand 5
A
71 84anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
15 24anti-parallel
Strand 3
A
27 33anti-parallel
Strand 4
A
117 124anti-parallel
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