Analysis of interatomic Contacts of Structural Units in PDB entry:
5GP4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GP4 entry

There are 3 chains in PDB entry 5GP4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 GLU 14HIS 452
A
 GLU 14VAL 454
B
 ASP 28ALA 451
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 5GP4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
18 27Right-handed 310
Helix 2
AA2
C
40 52Right-handed alpha
Helix 3
AA3
C
57 61Right-handed 310
Helix 4
AA4
C
71 81Right-handed alpha
Helix 5
AA5
C
92 110Right-handed alpha
Helix 6
AA6
C
125 148Right-handed alpha
Helix 7
AA7
C
166 176Right-handed alpha
Helix 8
AA8
C
193 201Right-handed 310
Helix 9
AA9
C
222 235Right-handed alpha
Helix 10
AB1
C
249 252Right-handed 310
Helix 11
AB2
C
253 258Right-handed alpha
Helix 12
AB3
C
294 298Right-handed 310
Helix 13
AB4
C
299 303Right-handed 310
Helix 14
AB5
C
324 364Right-handed alpha
Helix 15
AB6
C
391 402Right-handed alpha
Helix 16
AB7
C
430 449Right-handed alpha
Helix 17
AB8
A
18 27Right-handed 310
Helix 18
AB9
A
40 52Right-handed alpha
Helix 19
AC1
A
57 61Right-handed 310
Helix 20
AC2
A
71 81Right-handed alpha
Helix 21
AC3
A
92 110Right-handed alpha
Helix 22
AC4
A
125 148Right-handed alpha
Helix 23
AC5
A
166 176Right-handed alpha
Helix 24
AC6
A
193 201Right-handed 310
Helix 25
AC7
A
222 236Right-handed alpha
Helix 26
AC8
A
249 252Right-handed 310
Helix 27
AC9
A
253 258Right-handed alpha
Helix 28
AD1
A
294 298Right-handed 310
Helix 29
AD2
A
299 303Right-handed 310
Helix 30
AD3
A
324 363Right-handed alpha
Helix 31
AD4
A
391 401Right-handed alpha
Helix 32
AD5
A
430 450Right-handed alpha
Helix 33
AD6
B
40 54Right-handed alpha
Helix 34
AD7
B
57 61Right-handed 310
Helix 35
AD8
B
71 81Right-handed alpha
Helix 36
AD9
B
92 110Right-handed alpha
Helix 37
AE1
B
125 148Right-handed alpha
Helix 38
AE2
B
166 176Right-handed alpha
Helix 39
AE3
B
196 201Right-handed 310
Helix 40
AE4
B
222 235Right-handed alpha
Helix 41
AE5
B
249 252Right-handed 310
Helix 42
AE6
B
253 258Right-handed alpha
Helix 43
AE7
B
294 298Right-handed 310
Helix 44
AE8
B
299 303Right-handed 310
Helix 45
AE9
B
324 364Right-handed alpha
Helix 46
AF1
B
391 402Right-handed alpha
Helix 47
AF2
B
430 449Right-handed alpha
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There are 9 sheets in PDB entry 5GP4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 123first strand
Strand 2
C
288 292anti-parallel
Strand 3
C
270 276anti-parallel
Strand 4
C
243 246parallel
Strand 5
C
205 211parallel
Strand 6
C
158 162parallel
Strand 7
C
179 183parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
304 306first strand
Strand 2
C
313 315anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
366 371first strand
Strand 2
C
377 382anti-parallel
Strand 3
C
419 424anti-parallel
Strand 4
C
408 410anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 123first strand
Strand 2
A
288 292anti-parallel
Strand 3
A
270 276anti-parallel
Strand 4
A
243 246parallel
Strand 5
A
205 211parallel
Strand 6
A
158 162parallel
Strand 7
A
179 183parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 306first strand
Strand 2
A
313 315anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 371first strand
Strand 2
A
377 382anti-parallel
Strand 3
A
419 424anti-parallel
Strand 4
A
408 410anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 123first strand
Strand 2
B
288 292anti-parallel
Strand 3
B
270 276anti-parallel
Strand 4
B
243 246parallel
Strand 5
B
205 211parallel
Strand 6
B
158 162parallel
Strand 7
B
179 183parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
304 306first strand
Strand 2
B
313 315anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 371first strand
Strand 2
B
377 382anti-parallel
Strand 3
B
419 424anti-parallel
Strand 4
B
408 410anti-parallel
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