Analysis of interatomic Contacts of Structural Units in PDB entry:
5GPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GPD entry

There are 2 chains in PDB entry 5GPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 649ILE 870
B
 VAL 692LEU 875
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5GPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
658 662Right-handed 310
Helix 2
AA2
A
668 672Right-handed 310
Helix 3
AA3
A
673 679Right-handed alpha
Helix 4
AA4
A
685 691Right-handed 310
Helix 5
AA5
A
694 718Right-handed alpha
Helix 6
AA6
A
721 732Right-handed alpha
Helix 7
AA7
A
737 750Right-handed alpha
Helix 8
AA8
A
751 753Right-handed 310
Helix 9
AA9
A
754 774Right-handed alpha
Helix 10
AB1
A
786 803Right-handed alpha
Helix 11
AB2
A
806 816Right-handed alpha
Helix 12
AB3
A
827 842Right-handed alpha
Helix 13
AB4
A
851 864Right-handed alpha
Helix 14
AB5
B
695 718Right-handed alpha
Helix 15
AB6
B
722 732Right-handed alpha
Helix 16
AB7
B
736 750Right-handed alpha
Helix 17
AB8
B
753 774Right-handed alpha
Helix 18
AB9
B
786 803Right-handed alpha
Helix 19
AC1
B
807 816Right-handed alpha
Helix 20
AC2
B
827 846Right-handed alpha
Helix 21
AC3
B
853 874Right-handed alpha
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There are no sheets in PDB entry 5GPD
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