Analysis of interatomic Contacts of Structural Units in PDB entry:
5GPJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GPJ entry

There are 4 chains in PDB entry 5GPJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 4	PHE 766
B	ALA 3	PHE 766
C	ALA 3	PHE 766
D	ALA 4	PHE 766

There are125 helices in PDB entry 5GPJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	36	Right-handed alpha
Helix 2	AA2	A	69	113	Right-handed alpha
Helix 3	AA3	A	134	175	Right-handed alpha
Helix 4	AA4	A	178	217	Right-handed alpha
Helix 5	AA5	A	219	255	Right-handed alpha
Helix 6	AA6	A	273	288	Right-handed alpha
Helix 7	AA7	A	288	311	Right-handed alpha
Helix 8	AA8	A	313	319	Right-handed alpha
Helix 9	AA9	A	320	325	Right-handed alpha
Helix 10	AB1	A	325	347	Right-handed alpha
Helix 11	AB2	A	353	355	Right-handed 310
Helix 12	AB3	A	356	383	Right-handed alpha
Helix 13	AB4	A	401	426	Right-handed alpha
Helix 14	AB5	A	430	438	Right-handed alpha
Helix 15	AB6	A	438	443	Right-handed alpha
Helix 16	AB7	A	443	459	Right-handed alpha
Helix 17	AB8	A	459	477	Right-handed alpha
Helix 18	AB9	A	478	490	Right-handed alpha
Helix 19	AC1	A	492	517	Right-handed alpha
Helix 20	AC2	A	519	564	Right-handed alpha
Helix 21	AC3	A	572	615	Right-handed alpha
Helix 22	AC4	A	626	660	Right-handed alpha
Helix 23	AC5	A	661	700	Right-handed alpha
Helix 24	AC6	A	702	709	Right-handed alpha
Helix 25	AC7	A	713	732	Right-handed alpha
Helix 26	AC8	A	732	751	Right-handed alpha
Helix 27	AC9	A	751	758	Right-handed alpha
Helix 28	AD1	A	760	766	Right-handed alpha
Helix 29	AD2	B	7	33	Right-handed alpha
Helix 30	AD3	B	70	113	Right-handed alpha
Helix 31	AD4	B	114	116	Right-handed 310
Helix 32	AD5	B	134	168	Right-handed alpha
Helix 33	AD6	B	168	175	Right-handed alpha
Helix 34	AD7	B	176	178	Right-handed 310
Helix 35	AD8	B	179	217	Right-handed alpha
Helix 36	AD9	B	219	228	Right-handed alpha
Helix 37	AE1	B	228	242	Right-handed alpha
Helix 38	AE2	B	243	253	Right-handed alpha
Helix 39	AE3	B	273	312	Right-handed alpha
Helix 40	AE4	B	313	319	Right-handed alpha
Helix 41	AE5	B	320	325	Right-handed alpha
Helix 42	AE6	B	325	345	Right-handed alpha
Helix 43	AE7	B	356	383	Right-handed alpha
Helix 44	AE8	B	401	426	Right-handed alpha
Helix 45	AE9	B	430	442	Right-handed alpha
Helix 46	AF1	B	444	459	Right-handed alpha
Helix 47	AF2	B	459	477	Right-handed alpha
Helix 48	AF3	B	478	490	Right-handed alpha
Helix 49	AF4	B	492	517	Right-handed alpha
Helix 50	AF5	B	519	564	Right-handed alpha
Helix 51	AF6	B	572	615	Right-handed alpha
Helix 52	AF7	B	626	660	Right-handed alpha
Helix 53	AF8	B	661	700	Right-handed alpha
Helix 54	AF9	B	702	709	Right-handed alpha
Helix 55	AG1	B	713	732	Right-handed alpha
Helix 56	AG2	B	736	751	Right-handed alpha
Helix 57	AG3	B	751	758	Right-handed alpha
Helix 58	AG4	B	760	766	Right-handed alpha
Helix 59	AG5	C	7	34	Right-handed alpha
Helix 60	AG6	C	69	114	Right-handed alpha
Helix 61	AG7	C	134	168	Right-handed alpha
Helix 62	AG8	C	168	175	Right-handed alpha
Helix 63	AG9	C	178	217	Right-handed alpha
Helix 64	AH1	C	219	227	Right-handed alpha
Helix 65	AH2	C	228	243	Right-handed alpha
Helix 66	AH3	C	245	250	Right-handed alpha
Helix 67	AH4	C	273	288	Right-handed alpha
Helix 68	AH5	C	290	312	Right-handed alpha
Helix 69	AH6	C	313	319	Right-handed alpha
Helix 70	AH7	C	320	325	Right-handed alpha
Helix 71	AH8	C	325	346	Right-handed alpha
Helix 72	AH9	C	358	383	Right-handed alpha
Helix 73	AI1	C	400	426	Right-handed alpha
Helix 74	AI2	C	430	443	Right-handed alpha
Helix 75	AI3	C	443	459	Right-handed alpha
Helix 76	AI4	C	459	477	Right-handed alpha
Helix 77	AI5	C	478	490	Right-handed alpha
Helix 78	AI6	C	491	493	Right-handed 310
Helix 79	AI7	C	495	503	Right-handed alpha
Helix 80	AI8	C	508	517	Right-handed alpha
Helix 81	AI9	C	519	537	Right-handed alpha
Helix 82	AJ1	C	538	564	Right-handed alpha
Helix 83	AJ2	C	572	615	Right-handed alpha
Helix 84	AJ3	C	626	660	Right-handed alpha
Helix 85	AJ4	C	661	688	Right-handed alpha
Helix 86	AJ5	C	689	698	Right-handed alpha
Helix 87	AJ6	C	702	707	Right-handed alpha
Helix 88	AJ7	C	713	732	Right-handed alpha
Helix 89	AJ8	C	733	759	Right-handed alpha
Helix 90	AJ9	C	760	765	Right-handed alpha
Helix 91	AK1	D	7	35	Right-handed alpha
Helix 92	AK2	D	70	113	Right-handed alpha
Helix 93	AK3	D	134	165	Right-handed alpha
Helix 94	AK4	D	168	173	Right-handed alpha
Helix 95	AK5	D	174	176	Right-handed 310
Helix 96	AK6	D	179	217	Right-handed alpha
Helix 97	AK7	D	219	227	Right-handed alpha
Helix 98	AK8	D	227	242	Right-handed alpha
Helix 99	AK9	D	243	253	Right-handed alpha
Helix 100	AL1	D	254	256	Right-handed 310
Helix 101	AL2	D	273	288	Right-handed alpha
Helix 102	AL3	D	288	312	Right-handed alpha
Helix 103	AL4	D	313	319	Right-handed alpha
Helix 104	AL5	D	320	325	Right-handed alpha
Helix 105	AL6	D	325	339	Right-handed alpha
Helix 106	AL7	D	356	384	Right-handed alpha
Helix 107	AL8	D	401	426	Right-handed alpha
Helix 108	AL9	D	430	441	Right-handed alpha
Helix 109	AM1	D	444	459	Right-handed alpha
Helix 110	AM2	D	459	476	Right-handed alpha
Helix 111	AM3	D	478	489	Right-handed alpha
Helix 112	AM4	D	492	516	Right-handed alpha
Helix 113	AM5	D	519	543	Right-handed alpha
Helix 114	AM6	D	543	564	Right-handed alpha
Helix 115	AM7	D	572	602	Right-handed alpha
Helix 116	AM8	D	604	613	Right-handed alpha
Helix 117	AM9	D	627	651	Right-handed alpha
Helix 118	AN1	D	653	660	Right-handed alpha
Helix 119	AN2	D	661	687	Right-handed alpha
Helix 120	AN3	D	688	700	Right-handed alpha
Helix 121	AN4	D	702	707	Right-handed alpha
Helix 122	AN5	D	714	732	Right-handed alpha
Helix 123	AN6	D	733	751	Right-handed alpha
Helix 124	AN7	D	751	758	Right-handed alpha
Helix 125	AN8	D	760	766	Right-handed alpha

There are 5 sheets in PDB entry 5GPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	392	first strand
Strand 2	A	395	400	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	123	first strand
Strand 2	B	131	132	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	392	first strand
Strand 2	B	395	400	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	392	first strand
Strand 2	C	395	398	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	387	392	first strand
Strand 2	D	395	400	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GPJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GPJ