Analysis of interatomic Contacts of Structural Units in PDB entry:
5GQ0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GQ0 entry

There are 2 chains in PDB entry 5GQ0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 4	ASN 339
A	THR 4	ALA 341

There is 1 helix in PDB entry 5GQ0. Click on helix number for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	266	270	Right-handed 310

There are 17 sheets in PDB entry 5GQ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	11	first strand
Strand 2	B	333	338	anti-parallel
Strand 3	B	314	320	anti-parallel
Strand 4	B	305	311	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	31	first strand
Strand 2	B	34	38	anti-parallel
Strand 3	B	53	56	anti-parallel
Strand 4	B	61	64	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	112	117	parallel
Strand 3	B	103	107	anti-parallel
Strand 4	B	87	91	anti-parallel
Strand 5	B	80	84	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	146	147	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	136	first strand
Strand 2	B	139	143	anti-parallel
Strand 3	B	161	165	anti-parallel
Strand 4	B	170	173	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	185	first strand
Strand 2	B	195	203	anti-parallel
Strand 3	B	188	192	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	185	first strand
Strand 2	B	195	203	anti-parallel
Strand 3	B	214	223	anti-parallel
Strand 4	B	228	231	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	236	first strand
Strand 2	B	287	290	parallel
Strand 3	B	273	282	anti-parallel
Strand 4	B	253	262	anti-parallel
Strand 5	B	246	250	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	11	first strand
Strand 2	A	333	338	anti-parallel
Strand 3	A	314	320	anti-parallel
Strand 4	A	305	311	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	31	first strand
Strand 2	A	34	38	anti-parallel
Strand 3	A	53	56	anti-parallel
Strand 4	A	61	64	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	69	first strand
Strand 2	A	112	117	parallel
Strand 3	A	103	107	anti-parallel
Strand 4	A	87	91	anti-parallel
Strand 5	A	80	84	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	146	147	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	136	first strand
Strand 2	A	139	143	anti-parallel
Strand 3	A	161	165	anti-parallel
Strand 4	A	170	173	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	195	203	anti-parallel
Strand 3	A	188	192	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	195	203	anti-parallel
Strand 3	A	214	223	anti-parallel
Strand 4	A	228	231	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	236	first strand
Strand 2	A	287	290	parallel
Strand 3	A	278	282	anti-parallel
Strand 4	A	253	257	anti-parallel
Strand 5	A	246	250	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	262	first strand
Strand 2	A	273	274	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GQ0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GQ0